PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002528
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 335aa    MW: 37623 Da    PI: 9.8386
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073767PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-17590PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30265322359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh+
  Psi002528 265 DDHSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLDEPSMLIVTYEGEHNHS 322
                99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.6E-16225261IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-32251322IPR003657WRKY domain
PROSITE profilePS5081129.057258324IPR003657WRKY domain
SuperFamilySSF1182901.2E-26261322IPR003657WRKY domain
SMARTSM007742.2E-37263323IPR003657WRKY domain
PfamPF031068.1E-27265321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MENSDKFLSS TLEVNLSIQE AVRSGLQSAY QVLNILTKQN QQCPFEKIQH DFSRATEEAL  60
SKFRKTVSLL GRTDHGRIRK SPVLPVSGNG EAFIDTFHFI SPHNSNLVPH HASSALLYMP  120
PPAPSDLAIL QKLRQLFLPT NVKNPQLAGH QAQHIFREAD LMLRDNFMKF ENSINCTGNL  180
HQSCTKSFVS SVSTESNVGE DRHMTLQYPL AVSNEVTPDF YFKRKCSGKC ASSGGCRCSK  240
RRKLRIKRTI KVPATSSKLA DIPPDDHSWR KYGQKPIKGS PYPRGYYKCS SMRGCPARKH  300
VERCLDEPSM LIVTYEGEHN HSRILSGGPS LVLHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20251321271WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222242KRKCSGKCASSGGCRCSKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKE90.0B8LKE9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.16e-56WRKY DNA-binding protein 39