PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi001848

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 402aa MW: 45440 Da PI: 9.5441

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41650580	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-1145	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5.2e-24	58	137	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+l+Li++r eme r+ r+ +k lWee+++ +r++ + r +++C++kwe+l yk++++g+++r + +p+fd+l+ Psi001848 58 WTRAETLKLIRLRAEMEPRFARSGRKSELWEEIAESLRRESVARDAQRCRDKWEKLTASYKEVRDGQRNR-----QDFPFFDELD 137 ******************************************************************96.....568**997 PP
2	trihelix	66.9	4.1e-21	311	390	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ evl Li++r eme+r+ +++++++lWee ++ + ++g++r kqC+ekw++l ++k + +g+++r s+ py+ +l+ Psi001848 311 WKRAEVLRLIKFRAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDR-----SESPYYAELT 390 ********************************************************************97.....3458999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.339	50	114	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.2E-5	53	114	IPR009057	Homeodomain-like
SMART	SM00717	0.0025	54	116	IPR001005	SANT/Myb domain
Pfam	PF13837	1.7E-19	56	138	No hit	No description
CDD	cd12203	3.29E-24	56	121	No hit	No description
PROSITE profile	PS50090	8.153	303	367	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.2E-5	304	367	IPR009057	Homeodomain-like
SMART	SM00717	0.05	307	369	IPR001005	SANT/Myb domain
CDD	cd12203	7.93E-23	309	373	No hit	No description
Pfam	PF13837	2.1E-16	309	391	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
XSEPAEHAAA QLVQKRSHQV AETVMPIAVR PPAERGGAEA EEERKRAAEH KKQRSKNWTR 60 AETLKLIRLR AEMEPRFARS GRKSELWEEI AESLRRESVA RDAQRCRDKW EKLTASYKEV 120 RDGQRNRQDF PFFDELDPLL SLKPQKAAAA AAAAAVNFVS AETPSNFPTD DEMTEEGSPA 180 GKRRKTTPRG LTATDLDAVR ELLESLVNRQ QRFFVDLLES IERKEEIRER IRQEKEEKWR 240 AEERAQRCLF NNAMIVLAKK LVDGDPGFCG FEEFKPKPTT GGSEQTDHDA GAAAITVVGG 300 GGGPKKRSKN WKRAEVLRLI KFRAEMESRF AKSARRAALW EELAELLGAE GIKRDGKQCR 360 EKWDKLMAEF KDVSDGKRDR SESPYYAELT ATVGPGRSAE AG

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

XSEPAEHAAA QLVQKRSHQV AETVMPIAVR PPAERGGAEA EEERKRAAEH KKQRSKNWTR  60
AETLKLIRLR AEMEPRFARS GRKSELWEEI AESLRRESVA RDAQRCRDKW EKLTASYKEV  120
RDGQRNRQDF PFFDELDPLL SLKPQKAAAA AAAAAVNFVS AETPSNFPTD DEMTEEGSPA  180
GKRRKTTPRG LTATDLDAVR ELLESLVNRQ QRFFVDLLES IERKEEIRER IRQEKEEKWR  240
AEERAQRCLF NNAMIVLAKK LVDGDPGFCG FEEFKPKPTT GGSEQTDHDA GAAAITVVGG  300
GGGPKKRSKN WKRAEVLRLI KFRAEMESRF AKSARRAALW EELAELLGAE GIKRDGKQCR  360
EKWDKLMAEF KDVSDGKRDR SESPYYAELT ATVGPGRSAE AG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	56	KKQRSKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395857.1	1e-130	trihelix transcription factor GTL1-like
TrEMBL	A9NRE1	0.0	A9NRE1_PICSI; Uncharacterized protein
STRING	PP1S224_109V6.1	1e-129	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	2e-16	GT-2-like 1