PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001817
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 407aa    MW: 43975.8 Da    PI: 7.5682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073159PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-14579PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-17853147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v+++G+++W+ I+r ++ gR++k+c++rw + 
        Psi001817  8 KGPWSPEEDATLHRLVEKYGPRNWSQISRGIP-GRSGKSCRLRWCNQ 53
                     79******************************.***********985 PP
2Myb_DNA-binding54.52.6e-1762104347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ed  +++a++++G++ W+tIar ++ gRt++ +k++w++ 
        Psi001817  62 PFSPHEDATIIQAHARHGNK-WATIARLLP-GRTDNAIKNHWNST 104
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.165158IPR017930Myb domain
SuperFamilySSF466898.61E-326101IPR009057Homeodomain-like
SMARTSM007176.9E-17756IPR001005SANT/Myb domain
PfamPF002493.0E-17853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-25961IPR009057Homeodomain-like
CDDcd001671.07E-151052No hitNo description
SMARTSM007171.2E-1459107IPR001005SANT/Myb domain
PROSITE profilePS5129419.8260109IPR017930Myb domain
CDDcd001671.04E-1162105No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2362108IPR009057Homeodomain-like
PfamPF002491.8E-1462104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAVAERIKGP WSPEEDATLH RLVEKYGPRN WSQISRGIPG RSGKSCRLRW CNQLSPQVEH  60
RPFSPHEDAT IIQAHARHGN KWATIARLLP GRTDNAIKNH WNSTLRRRYH GEKDHSNGLV  120
VNLESAAEDK EAMISLTATA PAMVPALVFA AAADSSRKRS NSSCSANDNP GDAEVESRRL  180
KRLNFSESPT SSDNNNNNNE EDTISGHCNS VAPGSSPVQQ LHRPVPRQSA FNCYEAVKMH  240
EEASASVSAS GSAGAFDPPT SLSLSLPGSG SFSENNSSGE CSPIEQSFET KSAKFQAYQQ  300
QTGYSFADPF PVSGYLKTEE AMAMMSTAVK IAIGQALPLI FQLSSGNSHG GCSGDYSNFG  360
GSLLSIMREM IAKEVQNYTN GSQCSNQGPG LNSVAPVFRE VGLMLKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-4051081104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156180RKRSNSSCSANDNPGDAEVESRRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.46260.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LM220.0B8LM22_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.19e-60myb domain protein 77