PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001463
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 461aa    MW: 51750.6 Da    PI: 5.9585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073820PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-3526PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19217267256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Psi001463 217 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEDAALAYDQEAYKLRGE 267
                59******9.**********966...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.96E-31216276No hitNo description
PROSITE profilePS5103222.721217274IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-32217275IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22217275IPR016177DNA-binding domain
SMARTSM003801.3E-38217280IPR001471AP2/ERF domain
PfamPF008474.7E-12218267IPR001471AP2/ERF domain
PRINTSPR003679.8E-11218229IPR001471AP2/ERF domain
PRINTSPR003679.8E-11240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MASNRNEDWC DIKPMNSQQS FSRLLEASTP RPSSNQASSS CSRREDMPTA ESRVQARNLS  60
ERDDSSSSLF QNKSSSSSSS SHLFSFPSNH PQVISSINSS PSSSTLQQHG SEFFYWNQIT  120
TQAFPTHEST HQAIPFPQQQ ICFTNLQSPV QQQQLQFQSG FPLVSFNNQQ NLQEQQYQQQ  180
LLRHWSDALN LSPRGQLMKN GKHHDRRGFA LARPMKLYRG VRQRHWGKWV AEIRLPRDRT  240
RLWLGTFDTA EDAALAYDQE AYKLRGENAR LNFPHLFLNK GSTSPKACSV VAAPEEGNLQ  300
QKSDGGRNST TSSTSTSALT ANAAHQLGSP AAEGISDTAH AKSMDVEVKN DPEISAYEAN  360
TTLAPPAESG SEDFFKNEPQ DPQFHTWPAS PEYNIWGDLD ENWLNSVPAL ETDMAWDVLF  420
HNPFDTNVEG GDSDHKLETQ GQASQELHSP PQQMYVWKDC K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19216274160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.49330.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LK980.0B8LK98_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-40ERF family protein