PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001281
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 492aa    MW: 54036.9 Da    PI: 8.6295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073733PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-12981PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32156211359
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+geH h 
  Psi001281 156 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-DGQITEIVYKGEHSHL 211
                9***************************************.**************95 PP
2WRKY106.21.7e-33353410259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+vkg+++prsYY+Cts +C+v+k+ver+++dpk+v++tYeg+Hnh+
  Psi001281 353 EDGFRWRKYGQKVVKGNPYPRSYYKCTSLKCTVRKHVERASDDPKAVITTYEGKHNHD 410
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-29152213IPR003657WRKY domain
SuperFamilySSF1182901.83E-25153213IPR003657WRKY domain
SMARTSM007742.9E-36154212IPR003657WRKY domain
PROSITE profilePS5081123.342156213IPR003657WRKY domain
PfamPF031065.3E-26156210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-34340412IPR003657WRKY domain
SuperFamilySSF1182901.24E-28345412IPR003657WRKY domain
PROSITE profilePS5081135.898347412IPR003657WRKY domain
SMARTSM007742.2E-39352411IPR003657WRKY domain
PfamPF031061.1E-25353410IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEAPPEPQAS DNHVEAKERT TVVFKPLAKL GTMNPALSSL ANLGSFGISH QQALAQVQAQ  60
ARAQAQVQSQ PVSSLMPVSS SAATFPVHQV SSSAALTTPT SLSSAPGFNA YFVQQKPSLK  120
SETKQTIESP NPVPQNTEQI QRSLPPIPIA DRPSFDGYNW RKYGQKQVKG SEYPRSYYKC  180
THPNCPVKKK VERSHDGQIT EIVYKGEHSH LKPQPTRRLP TGSTQHPNGL DVSGREMESP  240
RGEKNEYFDV NADQSSPGFY ADPVGRTERL ALTNVSDPST PARGVSYGNG SPELSPCLSD  300
DGEGVNRADD EDDDEPVSKR RKKDKKMKDL LAPERPNREP RVVVQTSDAD ILEDGFRWRK  360
YGQKVVKGNP YPRSYYKCTS LKCTVRKHVE RASDDPKAVI TTYEGKHNHD PPVARNSNQD  420
AAGISSAGLS GNGANAAQEK QIQNRLTSFA RVSQSAVEGE DRMHVGEVGG VQLMRNNRQS  480
HGEDIEKEGS WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34156412877Probable WRKY transcription factor 4
2lex_A5e-34156412877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324RRKKDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ93WV05e-82WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLB8LKI10.0B8LKI1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-78WRKY family protein