PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi000775 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||||||
Protein Properties | Length: 747aa MW: 80814.9 Da PI: 6.8984 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.7e-07 | 301 | 321 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++ d C +aHg Psi000775 301 PCPDFRK-GTCRRSDVCEYAHG 321 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00248 | 4600 | 14 | 44 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 1.86E-13 | 16 | 139 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 9.6E-13 | 16 | 169 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.42E-13 | 18 | 143 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 8.9E-8 | 57 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.29 | 61 | 90 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.63 | 61 | 97 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 14.557 | 61 | 139 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3 | 99 | 132 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.1E-4 | 296 | 322 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.601 | 301 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 329 | 359 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.042 | 331 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 30 | 331 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MAENQAIKVK EISESCSSLH ELAANNDLIG FKKAMEEEGS KIDEVNFWYG RQNGSNQMVL 60 EQRTPLMVAA LYGSVDALKY ILSIYVTCGA DVNQACGSDN CTALHCAAVG GSACAVETVK 120 LLLQSGGDGI AFDAYGRRPP DVIMVSPKLT EVKVKLEEML NAAGTGQTSP TKVANIIPGL 180 PGLESKGMES MPSSTLLPLS VSLEASNNRS GCVHSPTSSP KSMEALKGFG DVNEKKEYPV 240 DPSFPDIKNS IYTTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRRYHYSCV 300 PCPDFRKGTC RRSDVCEYAH GVFECWLHPA QYRTRLCKDG TNCSRRVCFF AHTSEELRPL 360 IVSTGSAVPS PRASSSLDMS SVMSPLAPGS PSSVSMMSPF LSNPQQGSVL TPPMSPSASS 420 VNGYGGWPQP NVPTLHLPGS SVQASRLRAE LNARDMPVED SPRISDYEGQ LLNDFSPLST 480 QARMNAAAAV ISGGGNTTTR SGKYKSHGIN TVAPTNLEDL FASEVTSPRV AVHEPSIFSQ 540 MSPQMQAHKT AHAYIQIQNQ MLPPINTQAF SQGIKQMSPG HSLMQSPFQS SSYGLGSPGR 600 MSPRCVDVER HNTCGSPLSP AMAATLNSRI AAFVQRDKRS HSSRDLGANV TPNSWSDWGS 660 PTGKVDWGVQ GEELSKLRKS ASFGPRSYEE PDLSWVQTLV KETTPDGKDG GNVGCSGETP 720 HKGQIENVDH SVLGAWIEQM QLDQIVA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267839.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | C0PPY9 | 0.0 | C0PPY9_PICSI; Uncharacterized protein | ||||
STRING | XP_006421436.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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