PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi000653

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

YABBY

Protein Properties

Length: 128aa MW: 14497.9 Da PI: 7.722

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S49950892	PU_unref	Unigene	View CDS
gnl\|UG\|Psi#S49952326	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-4123	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	120.9	2e-37	9	104	72	170
YABBY 72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++++ n+ ++ +++ as+s++ + d+e +r+p r Pek+qrvPsaynrfi++eiqrika+nP+i+h+eafsaaaknWah+P+ihfgl Psi000653 9 PQQAQQQGPNTGPHDYTRDPASSSTAIND--AYPDNEETRIP-SYRQPEKKQRVPSAYNRFIRDEIQRIKANNPKITHKEAFSAAAKNWAHYPHIHFGL 104 56666777777777777777777776654..33344444433.4999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-36	30	104	IPR006780	YABBY protein
SuperFamily	SSF47095	2.36E-7	49	97	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.8E-5	51	97	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MAPLLQSLPQ QAQQQGPNTG PHDYTRDPAS SSTAINDAYP DNEETRIPSY RQPEKKQRVP 60 SAYNRFIRDE IQRIKANNPK ITHKEAFSAA AKNWAHYPHI HFGLMLDNRR QSNSEDGGDV 120 LNAEVCNN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.4083	0.0	shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017779.1	5e-38	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q9XFB0	2e-33	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A9NY99	2e-91	A9NY99_PICSI; Uncharacterized protein
STRING	POPTR_0006s06700.1	7e-37	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-35	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]