PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi000457

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 284aa MW: 34556.9 Da PI: 8.4387

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41646656	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-1879	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.5	1.1e-25	29	111	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W +qe+++ i++r e+e+++ ++k++k+lWe ++ km+++g++rs++qCk+kw+nl +ryk +++e ++ ++cp+f++l+a Psi000457 29 QWGHQETREFIAIRAELEKDFTQTKRNKTLWEIIAGKMKSKGYRRSAEQCKCKWKNLVNRYKGKETSEPDN----GRQCPFFEELDA 111 7*****************************************************************984....678****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.213	22	86	IPR017877	Myb-like domain
CDD	cd12203	5.37E-24	28	93	No hit	No description
Pfam	PF13837	5.2E-24	29	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MAALPLQSPS MDAEMNQSQL KRKDDRIPQW GHQETREFIA IRAELEKDFT QTKRNKTLWE 60 IIAGKMKSKG YRRSAEQCKC KWKNLVNRYK GKETSEPDNG RQCPFFEELD AIFKERERNM 120 DRLLLESKAG MKPKEKVRRF KRLLGEKSSD DYSEDEEDEE DDSEEEKIIK RKKSKADKER 180 QRVTADKYRA NSMQEVLEDF FQQQQRFEEQ WREAVEGREE ERRLREREWR IAMEKLEKER 240 VMKEQAWRER EDQRRAREEV RAERRDELFA ALINKLTQEE RSHI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.4021	0.0	shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024381970.1	1e-105	trihelix transcription factor GT-3b-like
TrEMBL	A9P2A3	0.0	A9P2A3_PICSI; Uncharacterized protein
STRING	PP1S285_47V6.1	1e-104	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	6e-35	Trihelix family protein