PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_58.g152.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 551aa    MW: 60140.3 Da    PI: 6.3891
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_58.g152.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07179200526
                                          --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                           C  ++++GtC +Gd+C +aHg
  model.Picochlorum_contig_58.g152.t1 179 ACAEYRKSGTCARGDSCMYAHG 200
                                          599******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.854174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.01174201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-5175204IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5179200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4180202IPR000571Zinc finger, CCCH-type
SMARTSM0035645210233IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0061157Biological ProcessmRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MCNDLVPLGS SLPKTNIEEL KKSPITGMVD SGSEVGKADT HGARNDSNRV GVQEVENYTD  60
SLFYKPVDIY GNSRQVDGEK EGELSQGGLE GVVEGGNDAS EDVTWEQENN SGSKRVSMEA  120
APYDFNDPMF STDEFRVWEM KIRSCPKSRP HDWTMCPFAH PGEKAKRRDP RVFNYCGTAC  180
AEYRKSGTCA RGDSCMYAHG VFECWLHPSR YRTQLCTDGV SCTRRVCFFA HRECELRKSV  240
GGVMPSIPSP ALHAGGLDSQ PRNVSGAAPD AHARALTSAI QMLDPLSKQT LLEALQNDLQ  300
SPNVSSSFFG TSTAHQNVDL NSQQMQGPNA QTLMEAIQQM HLGVQPSRRS VDASAPHHHA  360
SGLPLYSHYV GNSSRNSVDI GSLSRVGGAS RFSGEYSHHQ MYTPQMGGLN GIQTHSRHPP  420
VRNSVDIGSL YDSSNVYDSS RQVFPHAYSQ PQQQHQGNIL GGRPSFADDR RMSLSKIAEH  480
ATQEEESEGT GSGGSSSVST VMRSAYDGSS FSMDGRNGSD KKPFQREFSL ENILAELPRS  540
ASQVDLLQNQ *
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-53C3H family protein