PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_34.g80.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

1470871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

CPP

Protein Properties

Length: 720aa MW: 76346.6 Da PI: 10.0515

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_34.g80.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.7	3.1e-15	475	511	5	41
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +C+CkkskClk+YCeCf+a+ +C+ +C+C +C+Nk e model.Picochlorum_contig_34.g80.t1 475 RCKCKKSKCLKLYCECFKARGYCGGDCSCVGCSNKAE 511 7*********************************976 PP
2	TCR	52.6	9.1e-17	552	592	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++kgCnCkkskC+kkYCeCf+ag+ C+++CkC++C N++ model.Picochlorum_contig_34.g80.t1 552 QHRKGCNCKKSKCQKKYCECFQAGVPCGDHCKCNGCANTSA 592 589***********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.3E-13	471	512	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	30.928	472	592	IPR005172	CRC domain
Pfam	PF03638	2.7E-11	475	509	IPR005172	CRC domain
SMART	SM01114	1.7E-16	552	593	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.7E-12	555	590	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MSATVEAQRD SPSPSPRRNT AEGIFTTPER AKKQKINCGQ HEGVKIEGSP NFQALFRDLP 60 DLTPPRKNVS YSAYTGQSPS VAEFGFPRLT EGSPDRQRLG VEFLQRSTPS TIVQSPPSFV 120 SPRSSLSMLP PLPIFQPSPM RGNSQASTFL SPGDKDARRL SDASEYQRFS LSPGLQKVGQ 180 GNVSGSSEGK GFTSAFADIL DGHSRVSPKA FGGHGGNSSG RKDRDLIAGS WKSTETRGHL 240 NDGSNSPLQL RGHVSTQDRG TSTEYNGSAR VASRKRSLTF SDSITSPNRN GVKTFVASPG 300 PLHLALGGVE DSVDLLPIHP LRDSSREVSP NKPIPPSNTN SKSPEGVQRV SKGLDALAQS 360 PNGARLGIIR REDIIDSPAV KEATEAAVAK AMRANAEVTN QARNKAYASP KRPQRAAAAG 420 VAVAAAAAAL GSNGIVKGRK ASSFSAQQVS RSGINSLFAS TSIPGMSSND SGPVRCKCKK 480 SKCLKLYCEC FKARGYCGGD CSCVGCSNKA EFTDEIKKAR ESILTRNPQA FAEKIAETFV 540 PSQNGMLPTG AQHRKGCNCK KSKCQKKYCE CFQAGVPCGD HCKCNGCANT SAHPSAIMES 600 QKDVQAALLG LRHQSVSPVV QEMLLRSTRG NAGASTAVRE LMYGQAGRAR SHFQAKSKGQ 660 AQGTPQQHLV PIAWPLDSGT PGAVRSKFNA INTDGVIEGL TPVVTTAAID SKEENDDNY*

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MSATVEAQRD SPSPSPRRNT AEGIFTTPER AKKQKINCGQ HEGVKIEGSP NFQALFRDLP  60
DLTPPRKNVS YSAYTGQSPS VAEFGFPRLT EGSPDRQRLG VEFLQRSTPS TIVQSPPSFV  120
SPRSSLSMLP PLPIFQPSPM RGNSQASTFL SPGDKDARRL SDASEYQRFS LSPGLQKVGQ  180
GNVSGSSEGK GFTSAFADIL DGHSRVSPKA FGGHGGNSSG RKDRDLIAGS WKSTETRGHL  240
NDGSNSPLQL RGHVSTQDRG TSTEYNGSAR VASRKRSLTF SDSITSPNRN GVKTFVASPG  300
PLHLALGGVE DSVDLLPIHP LRDSSREVSP NKPIPPSNTN SKSPEGVQRV SKGLDALAQS  360
PNGARLGIIR REDIIDSPAV KEATEAAVAK AMRANAEVTN QARNKAYASP KRPQRAAAAG  420
VAVAAAAAAL GSNGIVKGRK ASSFSAQQVS RSGINSLFAS TSIPGMSSND SGPVRCKCKK  480
SKCLKLYCEC FKARGYCGGD CSCVGCSNKA EFTDEIKKAR ESILTRNPQA FAEKIAETFV  540
PSQNGMLPTG AQHRKGCNCK KSKCQKKYCE CFQAGVPCGD HCKCNGCANT SAHPSAIMES  600
QKDVQAALLG LRHQSVSPVV QEMLLRSTRG NAGASTAVRE LMYGQAGRAR SHFQAKSKGQ  660
AQGTPQQHLV PIAWPLDSGT PGAVRSKFNA INTDGVIEGL TPVVTTAAID SKEENDDNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-20	476	594	14	125	Protein lin-54 homolog
5fd3_B	2e-20	476	594	14	125	Protein lin-54 homolog

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP323	15	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04850.1	3e-25	Tesmin/TSO1-like CXC domain-containing protein