PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_3.g4.t2
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 456aa    MW: 51870.3 Da    PI: 10.2151
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_3.g4.t2genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.2e-13249291146
                                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                       +g+WT+eEd  l   v+ lG++ W++Ia+ ++  Rt++ c+ rw+ 
  model.Picochlorum_contig_3.g4.t2 249 KGAWTEEEDASLRAMVESLGTK-WTKIAAAIQ--RTPEACRFRWRE 291
                                       79********************.********9..**********96 PP
2Myb_DNA-binding39.91e-12301365245
                                       SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHH CS
                   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwq 45 
                                       g WT++E+ +l +av+++G++                      +W+++ ++m  +R++ qc+ +w+
  model.Picochlorum_contig_3.g4.t2 301 GLWTKDEEARLTEAVEKFGKPvkapagdgdngpsdrrilldniNWEAVVAHMK-TRSRVQCITKWY 365
                                       67**************************************************9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-4167235IPR009057Homeodomain-like
PROSITE profilePS500904.797167231IPR017877Myb-like domain
SMARTSM007173171245IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-13223292IPR009057Homeodomain-like
PROSITE profilePS5129417.008244297IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-12245291IPR009057Homeodomain-like
SMARTSM007174.4E-10248295IPR001005SANT/Myb domain
CDDcd001672.40E-7251292No hitNo description
PfamPF139213.7E-13252311No hitNo description
PROSITE profilePS500907.747295364IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-9298354IPR009057Homeodomain-like
SMARTSM007178.2E-11299370IPR001005SANT/Myb domain
CDDcd001671.15E-6303365No hitNo description
SuperFamilySSF466891.3E-10348429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-4355419IPR009057Homeodomain-like
PROSITE profilePS500906.992370419IPR017877Myb-like domain
SMARTSM007172.3374425IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MKCRKVLKRA VRLMRKTDSR PKKMLHAELE SALTRWVDQS GQYIWHSMKH VMTIALEYVY  60
CMGTGRISSE FFVFCSGHVG GFVIKDDRVS RTERPTSHKR KREEIDVTVE GVKDAGEAHP  120
VASRQPKTDT QVDTQATADQ GGRNASDATP ELYDKRPDQT WKEDLKRTRV KSGLYSKSEE  180
NTLREAVRQF AIDRNLPLDD FSWVISTGNK HRSADTKGIW TIVAKSLPQR TIKSVAAAGV  240
RLFHPYAIKG AWTEEEDASL RAMVESLGTK WTKIAAAIQR TPEACRFRWR EIRLGASKNT  300
GLWTKDEEAR LTEAVEKFGK PVKAPAGDGD NGPSDRRILL DNINWEAVVA HMKTRSRVQC  360
ITKWYLRQGP TMMDRGDWGP GDDKKLLSAL WKCGKEIDCD VPWDSLVSGR TASQCKRRWA  420
IMKKRVKNSK DYEFGQLVQK LVELYLPNLL KEQSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A5e-1417336497272DNA-binding protein reb1
5eyb_B5e-1417336497272DNA-binding protein reb1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-24MYB_related family protein