PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_251.g907.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 1156aa    MW: 130618 Da    PI: 9.8579
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_251.g907.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-1110051050148
                                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                       Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                                            r  WT e+ e l +a k +G + W++  + ++  +tl q+k+++q+y+
  model.Picochlorum_contig_251.g907.t1 1005 RPVWTDEDKESLTKAYKTYGRD-WEKLQEAVP-SKTLTQIKNFYQNYR 1050
                                            678*****************77.*********.**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.27570621IPR017884SANT domain
SMARTSM007176.7E-5571619IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-10572619IPR009057Homeodomain-like
SMARTSM007173.1809857IPR001005SANT/Myb domain
PROSITE profilePS500903.926819855IPR017877Myb-like domain
PROSITE profilePS5129311.84310031054IPR017884SANT domain
SMARTSM007176.1E-1010041052IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-810051050IPR009057Homeodomain-like
PfamPF002491.7E-810051050IPR001005SANT/Myb domain
SuperFamilySSF466894.0E-1110051057IPR009057Homeodomain-like
CDDcd001675.56E-710081049No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1156 aa     Download sequence    Send to blast
MANDDGLEDG EWRLPEEQPS KDHSRDRSMD VKGDADEFRR RGPHYSSYSG RPYDDRPRSR  60
HYSDYNAAPR GGYRPFRKPF EIARGPPHRA MPPPYEARPP SRGHNRDNDP SDAPPRYSVS  120
ASARYSSYGN RPKFSMGRRG GGYERPSMRE GPRASRPPPL NRESNDRSPF SIEEYQEKMR  180
LLSKRDPDFA SPKSPKAGGL HKRRDGSSVH SPKVRQQDDK DSKNEVSLGN HTNLNPADIL  240
EKIKRLDEKK DETKRSIASL DDDIETLKET LPILTNEVGM ASDRAPVPPS PVSLDVSEEE  300
LSTDSEDESD DGSTESHKKK RGKSSSKQST GRSRNLQRRM ELLAPEQRKL ISKFGQILKE  360
KREQDVNKII LKENESISSN TGNKFSKLYP SEMQRGIPEA QKITAQRLEE AFGQNPSPVS  420
SGVYNALRKE LVIVLKQHVL AGIRYRFAFE KWLQQEKQRL ASQVIGSPLR GISTHGSFTG  480
KPSAFDQSNE PTSPSLGRSS SRGGRNRGIV RSDLEERIAI ATLQAVESVK SSTALPTQLI  540
FTERSARWVK HYQDWNRLVK IPGKEWEECD YTRVWSQEEK NIFAEKFLIY HKDFARISTH  600
LPRRTIPEII KHYYAIQRTK EFEVTRRKWQ LRKRREKAEE TAMQRMGGAG HIGMAVAPQH  660
YPEPAQRMDS VKTTDSTHDS STSAKQKSRK GSKKNKNKVK TKLAESNNSE QYLVDTYFDE  720
HPKPNSFGPR LKRPSARSFD LLSHLDSPRK EAIETAPSEV QESLKESKSD GLPTGDYRLS  780
SSKLDQLTET SGKDVVSKKS KSSDSKSVGR GRLPNVNTDK KYIEAVQIYG KDFASIASYM  840
NRTVDAAKKY WERHSQRLNL DRLLDDPAKP LAQEKSEVSY AEDKTLEYNL WNPVLSILNL  900
VEDTGEDLSD TVATMRPHLA DVPSSEWMKL DSMLLPGGEV GSLLTSHAQS RKLLSSMSDI  960
QHGRGAPEDV IELVRGVESY FEMYQHAVPD KPANGPAGKK KGRGRPVWTD EDKESLTKAY  1020
KTYGRDWEKL QEAVPSKTLT QIKNFYQNYR AKYFTRDDDT SQAVKRKSSE PSSSPPCDNG  1080
NSSKKPKHDV SATNGADISL LSLPKEVLST LPQGVLDKME EVMTNPTAQM EFKALMMMQA  1140
SSETHPSLDK KDKDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1631636RKRREK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28831010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.19e-06MYB_related family protein