PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_197.g886.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family ERF
Protein Properties Length: 534aa    MW: 57701.3 Da    PI: 6.3829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_197.g886.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20182230355
                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAaka+++a+++++g
  model.Picochlorum_contig_197.g886.t1 182 YRGVRQRP-WGKWAAEIRDP-----TvgARRWLGTFDTAEEAAKAYDQAARAIRG 230
                                           9*******.**********9.....4459***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.024181238IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21181239IPR016177DNA-binding domain
SMARTSM003806.3E-37181244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-31181238IPR001471AP2/ERF domain
CDDcd000181.06E-29182238No hitNo description
PfamPF008471.2E-12182230IPR001471AP2/ERF domain
PRINTSPR003679.2E-11182193IPR001471AP2/ERF domain
PRINTSPR003679.2E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MRASRSKSGS NRGGTGGHNN ADLDHINVQS ASVYDTDATN LQGGRPSVVA RPGAGLPARA  60
IPSNPQEYHV PHNTRQQAQA NSNRPSVSTR SGGNHQHHYH MRSHQHRQGG NHDVSPQTAL  120
RSGGTSSVQH PTVPVSNLSS PGVYHQHGGQ GQKSSKADDG EVMVPSGVPP PVVVSKGKNK  180
TYRGVRQRPW GKWAAEIRDP TVGARRWLGT FDTAEEAAKA YDQAARAIRG NQAKCNFPLP  240
EEEEHQHHQQ KQQRMTDRRH TSERHGRSRG REEQEEDVVA ASSISFLNPS SVPEEALIHN  300
PLAAIHKTSG VICMSEAMCI PGGSTGDEGP LVEAAADQSD MEPWEAAREP TGLTPKGGGW  360
MGPEWMPKSM NMSGGANVGS MPFGRSVEMS ADLPQKFLAS GYDTFTDMGS IRQTLEIPAD  420
FVEESDPDDD LDDDVMILGT TPQFGSTPRH PHSVLGGNKE FKHGSDKVEP GEKKTRMTTR  480
MRAMAVVVQE ETEDDDYDDS SDDNSCMLGM SPDVAEHGFS SFGAQHAEVS ARR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20180239161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.18e-19ERF family protein