PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.8G266100.1.p

Common Name

PRUPE_ppa023374mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 641aa MW: 72100.3 Da PI: 5.5782

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G266100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	285.7	1.3e-87	275	638	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + Ll++Ae v +++e+a++lL r + +as +g+p+qR+++yf+eAL++r+ r++ ++ ++ + + s + s++ + + ++ P++ Prupe.8G266100.1.p 275 AHILLAAAEKVGYQQFERANRLLLRCEWIASFKGNPVQRVVFYFAEALRERIERETGSIPSKAKEMSISGHGLSTNP-TYIACHQEVPFHS 364 699*************************************************77777666655555543344443.444466778 PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 + ++t qaI e+v+ e++vH iD++i G+QW L+++La+R+e p l iT+vg k+++eetg+rL+++Ae+l++pf+f++++ Prupe.8G266100.1.p 365 VMQFTGIQAIIESVSLESKVHLIDLEIRSGVQWTGLMESLAEREECPVeLLTITAVGV---AGKQKIEETGKRLTSVAESLNIPFQFKAVI 452 ****************************************7666489***...589*********************** PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +++ed++ + ++v+ +Ea+aV l l ++ +++ +le+ +++++++l P ++vv+e e++hns+sF++rf++al yysa+fd+le+ Prupe.8G266100.1.p 453 ISAMEDIKDQLFDVEDDEAVAVYAPLILRTMISRPSCLEN----LMRVMRNLTPCIMVVIEVEVNHNSPSFVNRFIDALFYYSAFFDCLET 539 ****************************88888888....********************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 + ++ee +++ + l+++ i+n+va+eg+er++r ++ Wr+ + ++ + ++++s+ qa+ll ++++ +++ + ++l+ gWk+ Prupe.8G266100.1.p 540 CM--KQEEYRVLTEDLFREGIRNIVAAEGSERVARSVKMDVWRAFFARFRMVEMNFSNASLYQASLLAKRFGCPSCTLDRNGKCLTVGWKG 628 6..677778888888*****************************************************999************ PP GRAS 365 rpLvsvSaWr 374 p+ svSaW+ Prupe.8G266100.1.p 629 TPIHSVSAWK 638 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.778	248	618	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-85	275	638	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MANAFFPFTP FDFGVLGGLT PQLEDYEKDQ EVAFKVKPGH LFAIEELGLG EMDSSLSSEH 60 GFYQEDSKAK KGGLSHFSKD PEPTYSLSDN FNFDIVSSEH GFQQSNKSEK GLAHLSKDQD 120 HHHYQQHPHY QQQQPKSNYS ILDNFNFDSA FPPAHPIQDG THQFTYNQIG GSDIAETNKH 180 LPHQSSLAVL ELLNSYGSAF KNLRGERTSS NTGNEAEASS YVGQQKLSTE EIMRVAGARY 240 VQFSNQGYGD FYPLHPFGYA LSGLSEEETK DAELAHILLA AAEKVGYQQF ERANRLLLRC 300 EWIASFKGNP VQRVVFYFAE ALRERIERET GSIPSKAKEM SISGHGLSTN PTYIACHQEV 360 PFHSVMQFTG IQAIIESVSL ESKVHLIDLE IRSGVQWTGL MESLAEREEC PVELLTITAV 420 GVAGKQKIEE TGKRLTSVAE SLNIPFQFKA VIISAMEDIK DQLFDVEDDE AVAVYAPLIL 480 RTMISRPSCL ENLMRVMRNL TPCIMVVIEV EVNHNSPSFV NRFIDALFYY SAFFDCLETC 540 MKQEEYRVLT EDLFREGIRN IVAAEGSERV ARSVKMDVWR AFFARFRMVE MNFSNASLYQ 600 ASLLAKRFGC PSCTLDRNGK CLTVGWKGTP IHSVSAWKFR *

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MANAFFPFTP FDFGVLGGLT PQLEDYEKDQ EVAFKVKPGH LFAIEELGLG EMDSSLSSEH  60
GFYQEDSKAK KGGLSHFSKD PEPTYSLSDN FNFDIVSSEH GFQQSNKSEK GLAHLSKDQD  120
HHHYQQHPHY QQQQPKSNYS ILDNFNFDSA FPPAHPIQDG THQFTYNQIG GSDIAETNKH  180
LPHQSSLAVL ELLNSYGSAF KNLRGERTSS NTGNEAEASS YVGQQKLSTE EIMRVAGARY  240
VQFSNQGYGD FYPLHPFGYA LSGLSEEETK DAELAHILLA AAEKVGYQQF ERANRLLLRC  300
EWIASFKGNP VQRVVFYFAE ALRERIERET GSIPSKAKEM SISGHGLSTN PTYIACHQEV  360
PFHSVMQFTG IQAIIESVSL ESKVHLIDLE IRSGVQWTGL MESLAEREEC PVELLTITAV  420
GVAGKQKIEE TGKRLTSVAE SLNIPFQFKA VIISAMEDIK DQLFDVEDDE AVAVYAPLIL  480
RTMISRPSCL ENLMRVMRNL TPCIMVVIEV EVNHNSPSFV NRFIDALFYY SAFFDCLETC  540
MKQEEYRVLT EDLFREGIRN IVAAEGSERV ARSVKMDVWR AFFARFRMVE MNFSNASLYQ  600
ASLLAKRFGC PSCTLDRNGK CLTVGWKGTP IHSVSAWKFR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-41	282	640	27	381	Protein SCARECROW
5b3h_A	1e-41	282	640	26	380	Protein SCARECROW
5b3h_D	1e-41	282	640	26	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G266100.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007199314.1	0.0	DELLA protein RGL1
TrEMBL	M5VUD5	0.0	M5VUD5_PRUPE; Uncharacterized protein
STRING	EMJ00513	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-50	RGA-like 1

Link Out ? help Back to Top
Phytozome	Prupe.8G266100.1.p
Entrez Gene	18768373