PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G122800.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 406aa MW: 45231.5 Da PI: 4.4259 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.1 | 3.3e-18 | 58 | 147 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +kv++ps+v+ +l lpkkf+ eh +++++++ lede+g+++e k+ + + l++GW++F a++L egD++vF+l+ s+f Prupe.8G122800.4.p 58 LKVMLPSHVTGGFWLGLPKKFCCEHL--PKQDIMIALEDENGEVFETKY--LADK--VGLSGGWRGFSIAHKLLEGDVIVFHLVTPSKF-- 140 699*******************9995..34889****************..4444..45***********************9987888.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v ++r+ Prupe.8G122800.4.p 141 KVYIVRS 147 8888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.37E-23 | 50 | 149 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-19 | 50 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.15E-27 | 55 | 146 | No hit | No description |
SMART | SM01019 | 2.9E-20 | 57 | 148 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.435 | 57 | 148 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-16 | 58 | 147 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MLLDASEVVS ANPMMPESHK RKRATVESIY DTSQAQSSVL ERAQEVEVSL DPKFPSLLKV 60 MLPSHVTGGF WLGLPKKFCC EHLPKQDIMI ALEDENGEVF ETKYLADKVG LSGGWRGFSI 120 AHKLLEGDVI VFHLVTPSKF KVYIVRSNGL DELDGALGLM RLDACKKMDT GDTAACEREE 180 SETLEPISED NAIAFNTKSC PILDHSESES EDDVGFEVLD GLRLSESVVT FEEVKCMDDF 240 NVLVNGLIIN SEFSKYILNK YYELCCSQNS FLHEHLLDGL NCKLVAGVIS ETVNIADAIR 300 ACNITTPEGN FSTWDQTLKA FQGLGMNIGF LLARLDQLVS LASKSKRFKE ARLEKDQAEE 360 EMRCLEAKLF EVKEAVNRLE SEIEMLNTSS ENPELVFQEV AKSSW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G122800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020425151.1 | 0.0 | B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A251MWS2 | 0.0 | A0A251MWS2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008236526.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-42 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G122800.4.p |