PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G122800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 452aa    MW: 50531.5 Da    PI: 4.9145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G122800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84e-1899188299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +kv++ps+v+   +l lpkkf+ eh   +++++++ lede+g+++e k+     +  + l++GW++F  a++L egD++vF+l+  s+f  
  Prupe.8G122800.1.p  99 LKVMLPSHVTGGFWLGLPKKFCCEHL--PKQDIMIALEDENGEVFETKY--LADK--VGLSGGWRGFSIAHKLLEGDVIVFHLVTPSKF-- 181
                         699*******************9995..34889****************..4444..45***********************9987888.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++r+
  Prupe.8G122800.1.p 182 KVYIVRS 188
                         8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1991189IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-2391190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-2696187No hitNo description
PROSITE profilePS5086312.43598189IPR003340B3 DNA binding domain
SMARTSM010192.9E-2098189IPR003340B3 DNA binding domain
PfamPF023624.3E-1699188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAVLQDRKQS SSDLPPPKSN RRRPPRNKEN MFRKKSSSLT QSQTTKSIVV SANPMMPESH  60
KRKRATVESI YDTSQAQSSV LERAQEVEVS LDPKFPSLLK VMLPSHVTGG FWLGLPKKFC  120
CEHLPKQDIM IALEDENGEV FETKYLADKV GLSGGWRGFS IAHKLLEGDV IVFHLVTPSK  180
FKVYIVRSNG LDELDGALGL MRLDACKKMD TVLNHAGDTA ACEREESETL EPISEDNAIA  240
FNTKSCPILD HSESESEDDV GFEVLDGLRL SESVVTFEEV KCMDDFNVLV NGLIINSEFS  300
KYILNKYYEL CCSQNSFLHE HLLDGLNCKL VAGVISETVN IADAIRACNI TTPEGNFSTW  360
DQTLKAFQGL GMNIGFLLAR LDQLVSLASK SKRFKEARLE KDQAEEEMRC LEAKLFEVKE  420
AVNRLESEIE MLNTSSENPE LVFQEVAKSS W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G122800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425151.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A251MZ040.0A0A251MZ04_PRUPE; Uncharacterized protein
STRINGXP_008236526.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-42B3 family protein