PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G122700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 412aa    MW: 46131.9 Da    PI: 7.4508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G122700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-15101190299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +kv++ps+v+   +l lpkkf+ +h +k  ++++++lede+g+++e k+     +  + l++GW++F  +++L e D+v+++++  s+f  
  Prupe.8G122700.1.p 101 LKVMLPSHVTGCFWLGLPKKFCCDHLLK--QDTMIVLEDENGEEFETKY--LAEK--VGLSGGWRGFSMSHKLLEEDIVILHVVTPSKF-- 183
                         699**********************887..7789***************..4444..55***********************8876888.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++r+
  Prupe.8G122700.1.p 184 KVYIIRS 190
                         8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1792191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-2093192IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-2298189No hitNo description
SMARTSM010193.2E-15100191IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884100191IPR003340B3 DNA binding domain
PfamPF023621.0E-13101190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAVLQNQKHS YSSDTPLPSK SNRGRLPKDK EKLFSKKYSC LTQSQITKSI VVSANPKMPE  60
SRKLKRATVE SLYDTSQAQS SVLQRAKEVE ASLDPKFPTL LKVMLPSHVT GCFWLGLPKK  120
FCCDHLLKQD TMIVLEDENG EEFETKYLAE KVGLSGGWRG FSMSHKLLEE DIVILHVVTP  180
SKFKVYIIRS NGLDEADCAV GLTRLDAGIK QMDTGHIISC VREESGNLEP IPEDYAIAFN  240
TKSRPLSDQS ENDSEDLGFE VLDGLRLSES VVPFKEMYRM DNFNVLVNGL NINSEFSKYV  300
LNKYYELCCS QNSFLHEHLL EGLNCKLIVG VTSETINIAD AIRACKITTS EGYFSTWNKT  360
LIAFEGLGMN VGFLRARLDQ LAILASKSKG FKEARLEELR GKAFGSKRDH K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G122700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425151.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A251MWR80.0A0A251MWR8_PRUPE; Uncharacterized protein
STRINGXP_008236526.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-37B3 family protein