PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.8G028800.1.p | ||||||||
Common Name | PRUPE_ppa021097mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 591aa MW: 66957 Da PI: 7.2551 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93 | 2.9e-29 | 66 | 150 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++lk+plWe+vs+k+ e+g+ rs+k+Ckek+en+ k+++++keg++++ ++ +t+++fd+lea Prupe.8G028800.1.p 66 RWPRQETLALLKIRSQMDAAFRDSSLKAPLWEDVSRKLGEHGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--QEGKTYRFFDELEA 150 8********************************************************************96..45557******985 PP | |||||||
2 | trihelix | 100.6 | 1.2e-31 | 413 | 497 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r+ ++ r++++ k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+qle Prupe.8G028800.1.p 413 RWPRVEVEALINLRTCLDVRYQEAGPKGSLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFNQLE 497 8********************************************************************97.99***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.1E-4 | 63 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.78E-23 | 65 | 130 | No hit | No description |
PROSITE profile | PS50090 | 6.818 | 65 | 123 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.9E-19 | 65 | 150 | No hit | No description |
SMART | SM00717 | 0.0075 | 410 | 472 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.7E-21 | 412 | 498 | No hit | No description |
CDD | cd12203 | 3.05E-27 | 413 | 477 | No hit | No description |
PROSITE profile | PS50090 | 6.957 | 413 | 470 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 591 aa Download sequence Send to blast |
MPAVDVPVPD SSSTMLAAGS SSGEGVVGVV REGSHETTAV LSNSVQEDKD GRVDDLRDRN 60 LYGGNRWPRQ ETLALLKIRS QMDAAFRDSS LKAPLWEDVS RKLGEHGYYR SAKKCKEKFE 120 NVYKYHRRTK EGRSGKQEGK TYRFFDELEA FDQQNNHPSV PPKPQVLLWP NNHHHPNNPT 180 VVSHVITSVV PLSSTPNMMA TTNGSHLNGS HISPPPINSL PPQVTKPVNL YHQNLNGFKP 240 SLATSNLFSS STSSTASDEE FQVQQSGKKK RKWKYFFRRL TKEVLEKQEK LQEKFLEAIA 300 KSEHQRTVRE EAWRMQEMAR LDKEHQILAQ ERSSAAAKDA AVIEFLQKVS GQQNVTNNIQ 360 AIEVNRTIPS RPQPLPVLMP PPPPAPVAVI TTSFEVPRLD KGDNSTIPPG STRWPRVEVE 420 ALINLRTCLD VRYQEAGPKG SLWEEISAGM RRLGYNRSAK RCKEKWENIN KYFKKVKESS 480 KTRPEDSKTC PYFNQLEDLY RKKNMNNSSH VGYVEKPLPQ AILQPLIKVQ PDQPVFEAIE 540 RENGDKNEED EDGESTEEED HLDRSNDDDQ DEQMGIVTNY KESSMEMVES * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.8G028800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007200087.1 | 0.0 | trihelix transcription factor GT-2 | ||||
Swissprot | Q39117 | 1e-138 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | M5VKC5 | 0.0 | M5VKC5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ01286 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-118 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.8G028800.1.p |
Entrez Gene | 18767703 |