PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G247600.1.p
Common NamePRUPE_ppa016532mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 294aa    MW: 33060.9 Da    PI: 8.0972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G247600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-173379248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        + WT+eEd++l+++ + +G g+W+t++++ g+ R++k+c++rw +yl
  Prupe.7G247600.1.p 33 NLWTPEEDLILKKYLETHGEGNWATVSQRSGLMRSGKSCRLRWKNYL 79
                        56*******************************************97 PP
2Myb_DNA-binding51.72e-1685130148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Prupe.7G247600.1.p  85 RGHMSQEEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 130
                         7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3342779IPR017930Myb domain
SuperFamilySSF466898.44E-2931126IPR009057Homeodomain-like
SMARTSM007179.9E-153181IPR001005SANT/Myb domain
PfamPF002497.7E-163379IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-223486IPR009057Homeodomain-like
CDDcd001672.37E-123579No hitNo description
PROSITE profilePS5129424.77680134IPR017930Myb domain
SMARTSM007173.7E-1684132IPR001005SANT/Myb domain
PfamPF002499.5E-1585130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2387132IPR009057Homeodomain-like
CDDcd001671.04E-1188130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDKKRSSSSS SSSSVVTWKP AAANGNEQAP KKNLWTPEED LILKKYLETH GEGNWATVSQ  60
RSGLMRSGKS CRLRWKNYLR PNIKRGHMSQ EEQDLIIRMH KLLGNRWSLI AGRLPGRTDN  120
EVKNYWNTHL NKMSCPAAPK RKSSHLNKIV TNKKKKNKIS SCTTTTTCTD RTDDDHDQIQ  180
KKDATDFDHD HDHRQEPNGS NLTSSASCYY YDINDMVESP IFTSHHDCLQ YLPTNLNATF  240
LFDHDFIAAD AASSSSYLDS FLFFEAFGSS AAATAADMES VLPLACADHH LGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21321327106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139155KRKSSHLNKIVTNKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G247600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204556.10.0transcription factor MYB82
TrEMBLM5WG490.0M5WG49_PRUPE; Uncharacterized protein
STRINGEMJ057550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-61myb domain protein 82