PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G239500.1.p
Common NamePRUPE_ppa008076mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 347aa    MW: 39026.6 Da    PI: 7.4775
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G239500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.9e-1088112126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC +f   G C+ G++C++aHg
  Prupe.7G239500.1.p  88 YKTRLCVNFKT-GMCRNGENCNYAHG 112
                         9**********.*************8 PP
2zf-CCCH28.42.9e-09151173325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         ++lC+ f+ + +C+yGdrC+F H
  Prupe.7G239500.1.p 151 MKLCKKFYNGEECPYGDRCNFLH 173
                         689******66************ PP
3zf-CCCH42.21.3e-13232258127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC+ +  tG C++G++C+FaHg+
  Prupe.7G239500.1.p 232 WKTKLCNKWETTGKCPFGEKCHFAHGQ 258
                         8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-1385120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-886118IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-787113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.21187114IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-688112IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117148176IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-7151173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-9151174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-17228263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10230262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488231259IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6231258IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10232258IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNFSDQTQFM PSQTPYAGGS DAVNCWPPFP MSMNNEDQHS QFEQQPSPFK RPRNSEENQS  60
NPMPYPPMNA RMQPQNAPVN KGASNIFYKT RLCVNFKTGM CRNGENCNYA HGIEDIRHPP  120
PNWQELVSVR EEDRPPLSGN WDDDQKIIHR MKLCKKFYNG EECPYGDRCN FLHEDPAKFR  180
DDISRFRENT AISIGTTGPS VVHGSGSNHS EENRLVSTGM DTFRVNMKPV YWKTKLCNKW  240
ETTGKCPFGE KCHFAHGQAE LQVPGGRVEA EVLSSTPIST KPQAGPVNDS STTAMAILPA  300
SNEEGGQGKK RVLKWKGSKK INRIYADWLD DVPLVHQQNL SSTVES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G239500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202316.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-91C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLM5W9P80.0M5W9P8_PRUPE; Uncharacterized protein
STRINGEMJ035150.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-94C3H family protein