PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G201900.1.p | ||||||||
Common Name | PRUPE_ppa025811mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 30063.7 Da PI: 7.5433 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l ++ + +G+g W+ +++ g++R++ +c+ rw +yl Prupe.7G201900.1.p 14 KGAWTAQEDEILSNYMNTYGKGKWRDLPQRAGLKRCGRSCRMRWVNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 23.1 | 1.7e-07 | 67 | 103 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+v+++k+lG++ ++ gRt+ ++k++w++ Prupe.7G201900.1.p 67 RGNISADEEDLIVRLHKLLGNR--------IP-GRTDTEIKNYWNT 103 7899****************99........**.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.357 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.91E-22 | 12 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.46E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 11.09 | 66 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-5 | 66 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 69 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.65E-5 | 71 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGRRPCYEKD GINKGAWTAQ EDEILSNYMN TYGKGKWRDL PQRAGLKRCG RSCRMRWVNY 60 LRPGIKRGNI SADEEDLIVR LHKLLGNRIP GRTDTEIKNY WNTRLSKRSS SDQELLEHHK 120 PSVNPKNQHN EKGLIPSDQS DNAKAIRPKP FKCTKVDVGI PSHLQDDQDH QIMVDTTNNN 180 NFVSSSVPAG SSSNDLFILD LLNSTEFQQP QMKEWQLAMV ENYWRGSPII AAVDPFEPNI 240 DGEVAFNALS SFLNSEDSQY WIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-18 | 12 | 108 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G201900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423442.1 | 0.0 | transcription factor MYB6 isoform X1 | ||||
TrEMBL | A0A251NE65 | 0.0 | A0A251NE65_PRUPE; Uncharacterized protein | ||||
STRING | EMJ04498 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39915 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 4e-49 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G201900.1.p |
Entrez Gene | 18770134 |