PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G168500.1.p
Common NamePRUPE_ppa008596mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 327aa    MW: 35966.8 Da    PI: 6.1656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G168500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-1051100154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  Prupe.7G168500.1.p  51 RKVQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 100
                         5677889********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.27550100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-851104No hitNo description
SuperFamilySSF474593.01E-1251116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1051123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-851100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-756106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDQWNGDDFS AASAPSSAQP LLLPSSNRSH NSNSESRQRP DVETKDPIVA RKVQKADREK  60
LRRDRLNEHF LELGNTLDPD RPKNDKATIL TDTIQMLKDL TADVGKLKAE CAALTDESRE  120
LTQEKNELRE EKASLKSDIE NLNVQYQQRL RVMFPWAAMD PSVVMAPQYS YPMPVAVPPG  180
SIPMHPSLQP FPYFQTQTPA AIPNPCSTFV PYQAPANPPV EQPAPQYASV SHLSSKQDSR  240
SKSSDMQRGS NAERCDDSND VATDLELKMP GSSTQQDSSS GGRKSKQSQR KDRVVTDGSS  300
SSRYSSSQGL QDNSSNSVGD VPKSNK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G168500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204901.10.0transcription factor bHLH121
RefseqXP_020425090.10.0transcription factor bHLH121
SwissprotQ9LT233e-88BH121_ARATH; Transcription factor bHLH121
TrEMBLM5WH390.0M5WH39_PRUPE; Uncharacterized protein
STRINGEMJ061000.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-83bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]