PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G144000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 323aa    MW: 36596 Da    PI: 9.7599
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G144000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.9e-1415102298
                         EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         fk+l    ++ s++l +p  f+ ++ ggk ++  +  l+ +s  +W v++  +k +++++++kGWk+Fv++n+Lk  +f+vF   g+ +f 
  Prupe.7G144000.1.p  15 FKAL--VGNF-SNQLQIPPAFLVHFdGGKVPQ--KSHLR-TSAGTWPVNV--KKADDKFFFQKGWKKFVHDNDLKLCEFLVFGCAGDLGF- 96 
                         5555..3344.556********8888444334..34544.57789*****..*******************************8887666. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v ++ 
  Prupe.7G144000.1.p  97 -YVDIYG 102
                         .887765 PP
2B357.23e-18185270190
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffkv + ++++ +g ++lpk+f+++h   +     +tl+ ++gr+W v+li+++ +g+  l++G   F+++n+Lk+gD++vF l+++ ef
  Prupe.7G144000.1.p 185 FFKVALWNSYMDRGVMCLPKNFVKTHLTRH--RANVTLRVSDGRTWPVNLIFEGERGK--LGGGFMAFCRDNNLKVGDMCVFVLINKIEF 270
                         677777778888889***********5443..3479999*************999998..9*********************99976555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-179104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-1611104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.811104IPR003340B3 DNA binding domain
CDDcd100171.85E-131288No hitNo description
SMARTSM010194.9E-714104IPR003340B3 DNA binding domain
PfamPF023621.1E-1115102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-21178270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-23179271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.464185280IPR003340B3 DNA binding domain
PfamPF023628.4E-16185270IPR003340B3 DNA binding domain
CDDcd100173.17E-18185267No hitNo description
SMARTSM010191.9E-11186280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MARKSSAVRR KPSFFKALVG NFSNQLQIPP AFLVHFDGGK VPQKSHLRTS AGTWPVNVKK  60
ADDKFFFQKG WKKFVHDNDL KLCEFLVFGC AGDLGFYVDI YGRNGGKREF VTAERDRPHE  120
EGHGNVFHRK SPRHHGKQNL PSIDPIKYEA TDTESETSMH PLATTSTGKT IALQRDNSFN  180
SEKPFFKVAL WNSYMDRGVM CLPKNFVKTH LTRHRANVTL RVSDGRTWPV NLIFEGERGK  240
LGGGFMAFCR DNNLKVGDMC VFVLINKIEF LFEAGFYRKT EAANCTVPPE HYVMDITGCS  300
DICFYKLKEQ IATLQVRDIP GM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1315728120144B3 domain-containing transcription factor VRN1
4i1k_B3e-1315728120144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G144000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204063.20.0B3 domain-containing protein At3g17010 isoform X1
TrEMBLA0A251NBF40.0A0A251NBF4_PRUPE; Uncharacterized protein
STRINGEMJ052621e-147(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16060710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.12e-19B3 family protein