PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 468aa    MW: 52837.2 Da    PI: 5.8728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1621115199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+ ++ ++++ + l++pkkf+ ++g +  +++ l l + sg  W+v l  r+ +g++++ kGW +F +   L+ g  +vF ++g+s+f 
  Prupe.7G143600.1.p  21 FFKIILKGNTSSDAKLRIPKKFVMKYGDDLSNPVSLELPSGSGSAWKVDL--RRLDGEVWFDKGWADFSEFYSLDRGHWLVFGYQGNSKF- 108
                         899999999999**************8888899999**************..**********************************9999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v +f++
  Prupe.7G143600.1.p 109 -HVCIFDR 115
                         .*****98 PP
2B351.61.7e-16242326695
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         +++++ +  +l+lp +f + + +k  +s +++l+ ++ rsW v+l+y  ++gr  + +GW eFv +n+Lk++D++vF+l+++ + ++++ 
  Prupe.7G143600.1.p 242 MKPSYITGYILWLPSEFHNLYPIK--NSGEVILRVLDRRSWPVNLKY--GGGRAQFLSGWMEFVLDNNLKVNDVCVFELIDN-KVKPLFD 326
                         4555666667*******9888766..4559***************55..555544557*********************985.4446655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-2214116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2214117IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-1719114No hitNo description
PROSITE profilePS5086313.87421116IPR003340B3 DNA binding domain
SMARTSM010197.3E-1221116IPR003340B3 DNA binding domain
PfamPF023623.7E-1321115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-22235330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-22236330IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.661237333IPR003340B3 DNA binding domain
SMARTSM010199.0E-15239333IPR003340B3 DNA binding domain
CDDcd100172.85E-19242331No hitNo description
PfamPF023622.5E-14242325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MASLPQEIDD WPTFSPTTPH FFKIILKGNT SSDAKLRIPK KFVMKYGDDL SNPVSLELPS  60
GSGSAWKVDL RRLDGEVWFD KGWADFSEFY SLDRGHWLVF GYQGNSKFHV CIFDRTCTEV  120
DYPLRKQKME ETDDTDDDFH EESSDDSVEE QPDDSTCPRK TRKKSSLPCP RPQKKNRTSS  180
RGKDDYPAKL GSGSTSSTRR FEKRTPGCLG SIGPLPKSGK GIALQRANAY KSQHPFSVIV  240
AMKPSYITGY ILWLPSEFHN LYPIKNSGEV ILRVLDRRSW PVNLKYGGGR AQFLSGWMEF  300
VLDNNLKVND VCVFELIDNK VKPLFDVVIF PNIEAANCPN DREQTVPEIE ETNEDDDPSD  360
DSGDESGDAD YLSDDSDNDS VEIIENCTPF PRRTKEKSPM PCPQPPKKNK ASSSGKVDFP  420
ASGFAIALQR DDAFKSEHPF FKVAMRTSYI HHRNMNVPST FVKEHLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1522332035131B3 domain-containing transcription factor VRN1
4i1k_B1e-1522332035131B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424408.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A251NBE90.0A0A251NBE9_PRUPE; Uncharacterized protein
STRINGEMJ060461e-118(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-22B3 family protein