PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G126800.1.p
Common NamePRUPE_ppa024805mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 237aa    MW: 27788 Da    PI: 5.6455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G126800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28e-131461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W +eEde+l  +v++ G+ +W++ a++ g++R++ +c+ rw++yl
  Prupe.7G126800.1.p 14 KGPWLEEEDERLTGYVNLNGNWRWDALAKESGLRRSGRSCRMRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding53.74.6e-1770112448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          T eE+++++++++++G++ W++Iar+++ gRt++++k++w++yl
  Prupe.7G126800.1.p  70 ITVEEEKIILHLHERWGNK-WSKIARMLP-GRTDNEIKNYWRTYL 112
                         599****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.79961IPR017930Myb domain
SuperFamilySSF466891.41E-2512108IPR009057Homeodomain-like
SMARTSM007171.3E-81363IPR001005SANT/Myb domain
PfamPF002495.0E-111461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-181568IPR009057Homeodomain-like
CDDcd001671.35E-51661No hitNo description
PROSITE profilePS5129425.86462116IPR017930Myb domain
SMARTSM007176.5E-1666114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2369115IPR009057Homeodomain-like
PfamPF002499.4E-1670112IPR001005SANT/Myb domain
CDDcd001672.33E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTCQADMEGE KLRKGPWLEE EDERLTGYVN LNGNWRWDAL AKESGLRRSG RSCRMRWLNY  60
LRPNLKHGHI TVEEEKIILH LHERWGNKWS KIARMLPGRT DNEIKNYWRT YLKKKEPIQD  120
GNFQCTSKKG QQSLFFQEGD MSAEKQYNFN QHHDSVSNLC GAKDTCFDDL GLSEFALTNS  180
LYETRLSDWI SELSSEQSGI NYNQDCNSVE SDLCHLTWTP DDSNRWECPC FLWDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G126800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203868.11e-177transcription factor MYB27
TrEMBLM5VUK71e-176M5VUK7_PRUPE; Uncharacterized protein
STRINGEMJ050671e-177(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-61myb domain protein 27