PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G095500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 241aa    MW: 27869.9 Da    PI: 9.6746
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G095500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-11131153426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +C+++  tG+C yGd+CkF+H+
  Prupe.7G095500.1.p 131 DICKDYKDTGYCGYGDSCKFMHD 153
                         58********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-6127154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624127155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8129158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-11130158IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9131153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.4E-7191224IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.12E-6192222No hitNo description
CDDcd001620.00575194224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAEQNLVDEY QCDIKRLKKN RAKTAEKNQR QLQILQEENE KLSKMVDSYS KGMQKQLEAL  60
ENPKKRKRDH ETSFAQAKKV IFGSSSDEPQ EVLNRCNSTS LPSQRKASKL DGKLYFSSGL  120
SKSSTPDSNP DICKDYKDTG YCGYGDSCKF MHDRGDYKSG WQMEREQRKM MMMMMMRMAR  180
CHLHVSSAGN HYPVVTKCNH YFCEHCTLKH HSKNKKCFVC NKPTLGIFST VYEIRRRMAA  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-3065234125313RING finger protein 113A
5z58_M6e-3065234125313RING finger protein 113A
6ff4_t6e-3065234125313RING finger protein 113A
6ff7_t6e-3065234125313RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.201088e-47fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G095500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362642.21e-51zinc finger CCCH domain-containing protein 1
RefseqXP_008362643.21e-51zinc finger CCCH domain-containing protein 1
RefseqXP_028955149.11e-51zinc finger CCCH domain-containing protein 1
RefseqXP_028955150.11e-51zinc finger CCCH domain-containing protein 1
SwissprotQ8GX843e-47C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A251N9A30.0A0A251N9A3_PRUPE; Uncharacterized protein
STRINGXP_008362642.13e-51(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.13e-44C3H family protein