PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G018400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 363aa    MW: 41363.5 Da    PI: 7.2981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G018400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-174996148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Prupe.7G018400.1.p 49 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 96
                        79******************************99************97 PP
2Myb_DNA-binding45.51.7e-14102147148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Prupe.7G018400.1.p 102 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 147
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-234099IPR009057Homeodomain-like
PROSITE profilePS5129425.07544100IPR017930Myb domain
SuperFamilySSF466891.47E-3046143IPR009057Homeodomain-like
SMARTSM007172.4E-144898IPR001005SANT/Myb domain
PfamPF002493.7E-164996IPR001005SANT/Myb domain
CDDcd001675.09E-115196No hitNo description
Gene3DG3DSA:1.10.10.608.3E-25100152IPR009057Homeodomain-like
PROSITE profilePS5129418.75101151IPR017930Myb domain
SMARTSM007173.5E-13101149IPR001005SANT/Myb domain
PfamPF002496.5E-13102147IPR001005SANT/Myb domain
CDDcd001676.03E-9104147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MLITLFEIKC EVILDWKRRQ KRERERERER ERERDMGRPP CCEKVGIKKG PWTPEEDIIL  60
VSYIQEHGPG NWRSVPTNTG LLRCSKSCRL RWTNYLRPGI KRGNFTPHEE GMIIHLQALL  120
GNKWAAIASY LPQRTDNDIK NYWNTHLKKK LKKFQSALDP HMASDSTTST NHQLNIVSRR  180
SLSEGSLDNM ATHASSVTLK NNQSSTYASS TANISRLLEG WMRSSPTPKM LSNTNHLKLN  240
ASHDLQDQET PAGNLLSRHE ELESILSYEN LNNVASWDRS TCDSTQSDNK LNPRCGRVAN  300
DDEIIHEDDL VPDRDQKNKQ IIRCEGSTSA PPLSFLEKWL LDESAGQVDD DQMLELSPMS  360
SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-234715125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12333RERERERERER
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During seed development, gradually down-regulated towards the onset of ripening (veraison). During berry skin development, dramatic decrease to full repression at veraison, followed by a slight increase towards ripening. In flowers, barely detectable in stamens, at the interface of filaments and anthers. {ECO:0000269|PubMed:22018045}.
UniprotTISSUE SPECIFICITY: Restricted to stomatal guard cells. Mostly expressed in leaves, cotyledons, hypocotyls, seeds and ripened berry skins. {ECO:0000269|PubMed:22018045}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G018400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295641e-116KP229564.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB08) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203968.20.0myb-related protein 306
SwissprotB3VTV71e-125MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A251N5400.0A0A251N540_PRUPE; Uncharacterized protein
STRINGEMJ051670.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82033145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-106myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]