PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G364300.1.p

Common Name

PRUPE_ppb008343mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 267aa MW: 30000 Da PI: 6.0541

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G364300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.2	6e-28	84	171	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+Y+ +vGF +r+++ +sk+ g+i+ rtfvC+keg+r++++++ +++ ++ra tr+gCka+l +kk + gkw+vt++ +eH+H+l+ Prupe.6G364300.1.p 84 FYNAYGMRVGFMTRMNYLARSKHGGTIIGRTFVCNKEGYRKPDRRD-KTTIKPRAPTRVGCKAMLSIKKISIGKWVVTRFMKEHTHALT 171 *****************************************999.999**********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-25	84	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDSELDININ DGVLNDSSDA ELKHSNDGAL VGSFVEVEEM SHLGQGQDDE VTQNPCKDGS 60 SVVVEAHEPY VGQEFDTEET AQAFYNAYGM RVGFMTRMNY LARSKHGGTI IGRTFVCNKE 120 GYRKPDRRDK TTIKPRAPTR VGCKAMLSIK KISIGKWVVT RFMKEHTHAL TATANKGQKG 180 LIADQVPDDK TKIEELTREL FLERKQSASL REIVDLLFDH IEEHTQDLSK KVQYVVDKVK 240 EIESEGKSPS ILNLMYTVYI HISFII*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G364300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007206868.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X4
TrEMBL	M5W2V7	0.0	M5W2V7_PRUPE; Uncharacterized protein
STRING	EMJ08067	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-64	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.6G364300.1.p
Entrez Gene	18772548