PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G349200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 222aa    MW: 25201.1 Da    PI: 9.6762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G349200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ l+ +++q+G  +W++ ++  g+ R++k+c++rw++yl
  Prupe.6G349200.1.p 17 KGPWTPEEDDTLIAYIRQHGHFNWRALPKQAGLSRCGKSCRLRWFNYL 64
                        79******************99************************97 PP
2Myb_DNA-binding22.23.3e-0770114140
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqc 40 
                         rg++++eE+e +++++k+lG++  k++ ++ +      ++R+ +++
  Prupe.6G349200.1.p  70 RGNFSKEEEETILKLHKLLGNR-SKRVEQESQvpaaalLTRSINNI 114
                         89********************.****9999999998888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-25967IPR009057Homeodomain-like
PROSITE profilePS5129423.6031268IPR017930Myb domain
SMARTSM007172.2E-141666IPR001005SANT/Myb domain
PfamPF002496.7E-161764IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-231892IPR009057Homeodomain-like
CDDcd001671.27E-111964No hitNo description
PROSITE profilePS500904.42665110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-96897IPR009057Homeodomain-like
SMARTSM007175.869116IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRKMVRAPYC EKMGLKKGPW TPEEDDTLIA YIRQHGHFNW RALPKQAGLS RCGKSCRLRW  60
FNYLRPDIKR GNFSKEEEET ILKLHKLLGN RSKRVEQESQ VPAAALLTRS INNIIPLKNG  120
DQRIQCPIQY APTTLFRLDD DLHNKLLSKR TCSCPNIINA DPGLQPPFSS SSNSTAGQIM  180
KREGSKTHED MDFWYSLFMK AGGTSTVALP VCHCMMEFSA I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-161591580B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G349200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206392.21e-161transcription factor MYB14 isoform X1
SwissprotQ7XBH43e-49MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A251P1P21e-166A0A251P1P2_PRUPE; Uncharacterized protein
STRINGEMJ082055e-91(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.19e-49myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]