PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G278300.1.p

Common Name

PRUPE_ppa023008mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 269aa MW: 30284.6 Da PI: 8.7394

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G278300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.8e-32	25	78	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt+eLH+rFveav++LGG+++AtPk il++m+v gLt++h+kSHLQkYR+ Prupe.6G278300.1.p 25 ERLRWTQELHDRFVEAVTKLGGPDRATPKGILKAMSVSGLTIYHIKSHLQKYRI 78 7****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.728	21	81	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-30	23	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-17	24	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.4E-26	25	79	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-9	26	77	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-10	110	148	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MLGAALIPVE FEMAPSQSDG SAGRERLRWT QELHDRFVEA VTKLGGPDRA TPKGILKAMS 60 VSGLTIYHIK SHLQKYRISK FIPESTSKGK LQKKNISEML PNFGATSGAQ LNEALKIMQI 120 QVQRRLSDQN EVQKILKHKI EAQARFLDIF SAERHNNNKN RPILITKRSK VPLPRTSLPS 180 LCEDSESNAK EFCSDSEAAK TEIQSSAEQF QSLKRLRLHH QNDEVCEIAL NSEWYNQSHS 240 LLLPHEDPIN FPWNLADCSS PLVPTCFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	23	81	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	23	81	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	23	81	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	23	81	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	23	81	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	23	81	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	23	81	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	23	81	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G278300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021830335.1	0.0	myb family transcription factor PHL7-like
TrEMBL	A0A251NWT9	0.0	A0A251NWT9_PRUPE; Uncharacterized protein
STRING	EMJ09787	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-49	G2-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.6G278300.1.p
Entrez Gene	18772754