PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G260700.1.p

Common Name

PRUPE_ppa018432mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 328aa MW: 36163 Da PI: 7.3772

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G260700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Prupe.6G260700.1.p 61 YSCSFCRREFRSAQALGGHMNVH 83 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.06E-6	58	87	No hit	No description
PROSITE profile	PS50157	11.219	61	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEQARYWMWA KRKHNSLSSS QHDHLQVPIS NPSNDDSWEE QAFAEDAAGP LGGCIWPPRS 60 YSCSFCRREF RSAQALGGHM NVHRRDRARL KQSPNDETTL QNHHHPDDRS VQNHNPFSSS 120 SLGSFQYPSH QVCALVYNPN NPSSDPGATI ASSSPSSGSR VSAQLPCKEN CADQTLKIPP 180 SSSASLSFPQ SWSILGTNRN NYDKSVARNI IEAEKISEAV ESGCRAKGDH HVTSTTDLHN 240 LSVSLNLVVR CARPSVSGDE DKAIISCKRR RTEDVPSSTP FFLKSGSVDK VHHLQSEGFE 300 LSCTSSIEDL DLELRLGDRP KVIKVDK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-12	56	83	2	29	superman protein
2l1o_A	1e-12	56	83	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G260700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020422185.1	0.0	zinc finger protein 10
TrEMBL	A0A251NW16	0.0	A0A251NW16_PRUPE; Uncharacterized protein
STRING	EMJ07660	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1776	30	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	1e-26	zinc-finger protein 10

Link Out ? help Back to Top
Phytozome	Prupe.6G260700.1.p
Entrez Gene	18773224