PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G256900.2.p | ||||||||
Common Name | PRUPE_ppa002522mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 663aa MW: 74056 Da PI: 9.8519 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.6e-07 | 569 | 618 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Prupe.6G256900.2.p 569 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFdgaKHRTYVDLKDKWKTL 618 567888899*****************99888889*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.0E-5 | 376 | 448 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 13.67 | 564 | 623 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.44E-15 | 566 | 654 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-7 | 568 | 621 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 569 | 619 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.91E-16 | 570 | 620 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MVLQRRLDYG FNGYQVPEVP RASRSARGRV PIKKKLEANQ IRAFEILASV AGKLLQESEH 60 PLPTNDSCGK DAHFIFDDTT KSKQEKGNLS KEDPCERGSC DEQTLLCVGR MQECQQSYTL 120 NGVSHSQENF SYEINRASKS FDHSESIYSN KIFSDSPLFG DSVEEKPRGV LKRKLETGPS 180 KDMSIKDERT QILGNSEDIM KVEGMPPELV SCGHDVKTSF SGDCKNHDPL LCHCANIKVD 240 SRDDDENCVR YAQPLSVVKE FEHPPDAGDE KINNLAASRH WRVAPERRIG GYSRNDGKIR 300 QVYRHGRNCY THQRSQKIYP FKKRKFFNRM PLATPDRGFN CESIFNSPDK RVNSDNYCAE 360 IGPSSSTTGG QVPLKSSDCN VKLSIKSFKV PDLFIEIPAT ATVGSLKRTV MEAVTSILGD 420 GLHVGILVRG KKVRDDNKTL LQTGISQDEK SRNLGFMLEP KRAKLTYSPR SKDPSLPSGR 480 SRELTRHSAS LVSQPGTSNV SPNPPVINFG GYVKRDLNAV PSLPSTSIEK TPQASQALVA 540 VPPISMNALA VVPFHRKSGH PEYVQRRIRR PFSVPEVEAL VQAVEKLGTG RWRDVKLRAF 600 DGAKHRTYVD LKDKWKTLVH TARISAQQRR GEPVPQELLD RVLAAHACWS QRRAKQQVKA 660 AV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-50 | 553 | 659 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 315 | 324 | QKIYPFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G256900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007206321.1 | 0.0 | telomere repeat-binding protein 5 | ||||
Refseq | XP_020421776.1 | 0.0 | telomere repeat-binding protein 5 | ||||
Refseq | XP_020421777.1 | 0.0 | telomere repeat-binding protein 5 | ||||
Refseq | XP_020421778.1 | 0.0 | telomere repeat-binding protein 5 | ||||
TrEMBL | M5WL30 | 0.0 | M5WL30_PRUPE; Uncharacterized protein | ||||
STRING | EMJ07520 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-128 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G256900.2.p |
Entrez Gene | 18774343 |