PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.6G255400.1.p | ||||||||
Common Name | PRUPE_ppa003208mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 594aa MW: 64823.3 Da PI: 7.38 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.5e-16 | 75 | 121 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Prupe.6G255400.1.p 75 KGGWTPQEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 121 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.7 | 7.6e-20 | 127 | 173 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W++Ia+ ++ gR +kqc++rw+++l Prupe.6G255400.1.p 127 KGPWTQEEDDKIIELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 173 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 54.6 | 2.6e-17 | 179 | 222 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Prupe.6G255400.1.p 179 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 222 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.982 | 70 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-14 | 74 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 75 | 121 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.33E-15 | 76 | 131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 77 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.86E-12 | 78 | 121 | No hit | No description |
PROSITE profile | PS51294 | 33.805 | 122 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-32 | 124 | 220 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-19 | 126 | 175 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-19 | 127 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.13E-17 | 129 | 173 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-28 | 130 | 176 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 177 | 228 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-16 | 178 | 226 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.62 | 178 | 228 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.0E-15 | 179 | 222 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-12 | 181 | 224 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 594 aa Download sequence Send to blast |
MSSNSIPATS SQAWEEMEEV KLEECCLENK QSTAASSSSV SEGSGSAILK SPGVCSPAST 60 SPTHRRTSGP IRRAKGGWTP QEDETLRNAV AAFKGKSWKK IAEFFPDRSE VQCLHRWQKV 120 LNPDLVKGPW TQEEDDKIIE LVAKYGPTKW SLIAKSLPGR IGKQCRERWH NHLNPDIKKD 180 AWTLEEELAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF YLATGKLPPA 240 AKNGSQNGAK ETSKSTATKR LLVCSTKGSD STAQTSSGNA DVCKLDEDGK DQFESSAPHQ 300 DLGASSSVLP NEPADSEGVE CQLRSSFRDL SCCNSESGSK FENFAVNSKP QIESIINSQA 360 ESENCGFNNL VDEDRVKRTP VPVETPGYGS LYYEPPLESC GPFDSGFSSM RCFQHDYASS 420 PNVSPISFYT PPCVKGSGLC NRSPESILKM AAKTFPNTPS ILRKRKNTSQ GHLPPNKIGL 480 VDCESVREVL NVSDEQERHK NSAEMSGSQE ESLCESPTSQ GISTIGPNGK AFNASPPYRL 540 RARRTAVFKS VEKQLEFTCD KEYDGNSKSV ELSANGGSGV IKDCSHATKM EVT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-68 | 74 | 228 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-68 | 74 | 228 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.6G255400.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423086.1 | 0.0 | transcription factor MYB3R-3 | ||||
Swissprot | Q6R032 | 1e-177 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | M5W7C5 | 0.0 | M5W7C5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09642 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6616 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-164 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.6G255400.1.p |
Entrez Gene | 18774406 |
Publications ? help Back to Top | |||
---|---|---|---|
|