PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G255400.1.p
Common NamePRUPE_ppa003208mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 594aa    MW: 64823.3 Da    PI: 7.38
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G255400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-1675121148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT++Ede l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Prupe.6G255400.1.p  75 KGGWTPQEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 121
                         688*****************************.************986 PP

2Myb_DNA-binding62.77.6e-20127173148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++++++v+++G+  W++Ia+ ++ gR +kqc++rw+++l
  Prupe.6G255400.1.p 127 KGPWTQEEDDKIIELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 173
                         79******************************.*************97 PP

3Myb_DNA-binding54.62.6e-17179222146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Prupe.6G255400.1.p 179 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 222
                         679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.98270121IPR017930Myb domain
SMARTSM007175.3E-1474123IPR001005SANT/Myb domain
PfamPF002496.3E-1575121IPR001005SANT/Myb domain
SuperFamilySSF466899.33E-1576131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-2277129IPR009057Homeodomain-like
CDDcd001672.86E-1278121No hitNo description
PROSITE profilePS5129433.805122177IPR017930Myb domain
SuperFamilySSF466895.5E-32124220IPR009057Homeodomain-like
SMARTSM007176.7E-19126175IPR001005SANT/Myb domain
PfamPF002492.9E-19127173IPR001005SANT/Myb domain
CDDcd001678.13E-17129173No hitNo description
Gene3DG3DSA:1.10.10.603.9E-28130176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-23177228IPR009057Homeodomain-like
SMARTSM007172.6E-16178226IPR001005SANT/Myb domain
PROSITE profilePS5129422.62178228IPR017930Myb domain
PfamPF002492.0E-15179222IPR001005SANT/Myb domain
CDDcd001671.29E-12181224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MSSNSIPATS SQAWEEMEEV KLEECCLENK QSTAASSSSV SEGSGSAILK SPGVCSPAST  60
SPTHRRTSGP IRRAKGGWTP QEDETLRNAV AAFKGKSWKK IAEFFPDRSE VQCLHRWQKV  120
LNPDLVKGPW TQEEDDKIIE LVAKYGPTKW SLIAKSLPGR IGKQCRERWH NHLNPDIKKD  180
AWTLEEELAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF YLATGKLPPA  240
AKNGSQNGAK ETSKSTATKR LLVCSTKGSD STAQTSSGNA DVCKLDEDGK DQFESSAPHQ  300
DLGASSSVLP NEPADSEGVE CQLRSSFRDL SCCNSESGSK FENFAVNSKP QIESIINSQA  360
ESENCGFNNL VDEDRVKRTP VPVETPGYGS LYYEPPLESC GPFDSGFSSM RCFQHDYASS  420
PNVSPISFYT PPCVKGSGLC NRSPESILKM AAKTFPNTPS ILRKRKNTSQ GHLPPNKIGL  480
VDCESVREVL NVSDEQERHK NSAEMSGSQE ESLCESPTSQ GISTIGPNGK AFNASPPYRL  540
RARRTAVFKS VEKQLEFTCD KEYDGNSKSV ELSANGGSGV IKDCSHATKM EVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-68742285159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-68742285159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G255400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423086.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-177MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLM5W7C50.0M5W7C5_PRUPE; Uncharacterized protein
STRINGEMJ096420.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-164myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]