PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.6G214300.1.p | ||||||||
Common Name | PRUPE_ppa022431mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 378aa MW: 42076.8 Da PI: 7.3072 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G+g +W + ++++g++R++k+c++rw++yl Prupe.6G214300.1.p 14 KGPWSPEEDATLKAYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.4 | 6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Prupe.6G214300.1.p 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.529 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.76E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.10E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.666 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.22E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 378 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKQQQAQQS RRAASSLKQE MIKRSESAAT FANLPVEFVN QNPYWAPELP VAVPMVNYQT 180 HEPQLIKDQA SIKNMLIKLG GRFSADNTTT TTTNTNFLYP VDISSSSSSD HQFYQNPIDV 240 LTCTSAPNNN IYAADQFAST HYDANNNGGG SSSPTMFQGL DDHNNNLQAD HHLSELVVYG 300 NDFPHQHQQL DGFYQAAETL NNGSTGTSTT SAESEISWGD INSLVYSTQM VSDYETCQQR 360 MPTVHSVFAE STYFGLK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.6G214300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208599.1 | 0.0 | transcription factor RAX3 | ||||
TrEMBL | M5WKM3 | 0.0 | M5WKM3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09798 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-76 | myb domain protein 84 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.6G214300.1.p |
Entrez Gene | 18772255 |