PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G208900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24181.7 Da PI: 9.9635 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.6 | 2.5e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgkl+e+ss Prupe.6G208900.1.p 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLMIFSSTGKLFEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 80.1 | 5.5e-27 | 77 | 170 | 8 | 98 |
K-box 8 s...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + +++++++ +q+e+a+L++++++L++ +R+ +Ge+L Ls+keL+ Le+qLe sl+ iR +K+++l+++ieel +k + ++++n++L Prupe.6G208900.1.p 77 QqllNQASEMKFWQREVANLRQQLQSLKEHHRQCMGEQLYGLSVKELKGLESQLEMSLQGIRMQKEQILTDEIEELNEKSNLVHQQNMELF 167 233468899*********************************************************************************9 PP K-box 96 kkl 98 kk+ Prupe.6G208900.1.p 168 KKV 170 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.866 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.80E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-31 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.7E-25 | 82 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.284 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLMIFSS TGKLFEFSSN 60 SMKSVIEKYN KSKEGQQQLL NQASEMKFWQ REVANLRQQL QSLKEHHRQC MGEQLYGLSV 120 KELKGLESQL EMSLQGIRMQ KEQILTDEIE ELNEKSNLVH QQNMELFKKV YGTTAVNSES 180 RNACIPYGMS ISDDSHVPNQ LQLRRPNQQT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-21 | 1 | 81 | 1 | 81 | MEF2C |
5f28_B | 6e-21 | 1 | 81 | 1 | 81 | MEF2C |
5f28_C | 6e-21 | 1 | 81 | 1 | 81 | MEF2C |
5f28_D | 6e-21 | 1 | 81 | 1 | 81 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Primarily expressed during lateral root formation and embryogenesis. {ECO:0000269|PubMed:11855641}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in root. {ECO:0000269|PubMed:11855641}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G208900.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420908.1 | 1e-154 | MADS-box transcription factor 23 | ||||
Refseq | XP_020420909.1 | 1e-154 | MADS-box transcription factor 23 | ||||
Swissprot | Q9SZJ6 | 2e-90 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A251NUZ5 | 1e-152 | A0A251NUZ5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008236592.1 | 1e-145 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 8e-93 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G208900.1.p |
Publications ? help Back to Top | |||
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