PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G196000.1.p
Common NamePRUPE_ppa009712mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 288aa    MW: 30748.9 Da    PI: 6.6729
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G196000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1001.6e-3169121457
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                          rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e 
  Prupe.6G196000.1.p  69 SRYRECLKNHAVGIGGHALDGCGEFMPA-GAEGTLDALKCAACNCHRNFHRKEG 121
                         79*************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2367123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.3E-2970120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-2970120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.57671120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.28E-19208277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-30210277IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-25218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEFEDQEEHD EEMEMAASYD SLGNSAGGVR VKMSSSGPEG VAAIAAAAAG SQQQQQQQQQ  60
QQQQRKGASR YRECLKNHAV GIGGHALDGC GEFMPAGAEG TLDALKCAAC NCHRNFHRKE  120
GDSGGLALMT PDPYGQLVPL HGQHNHPQFS PYYRTPAGYL QLAPHHRPLA LPSTSGGGGT  180
HSRGEEQEDD VSNPSGGGGG GGDLGMGGGL HGTASSGKKR FRTKFTAEQK ERMLTLAETL  240
GWRIQKQDEP AIQQFCNETG VKRHVLKVWM HNNKHTLGPS NDEPNPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-262192811879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G196000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420676.10.0zinc-finger homeodomain protein 1
SwissprotQ6YXH52e-78ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A251NUJ30.0A0A251NUJ3_PRUPE; Uncharacterized protein
STRINGEMJ068910.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-63homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]