PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G187700.2.p

Common Name

PRUPE_ppa000612mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 1061aa MW: 118510 Da PI: 5.7104

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G187700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	143.8	4.9e-45	2	86	34	118
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 p+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een++fqrr+yw+Lee+l++ivlvhy+evk Prupe.6G187700.2.p 2 PPGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEDLQHIVLVHYREVK 86 889*******************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	65.655	1	91	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.9E-45	1	86	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.6E-38	2	84	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.2E-7	474	560	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.2E-18	475	560	IPR014756	Immunoglobulin E-set
Pfam	PF01833	8.8E-7	475	559	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	7.5E-17	655	771	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.97E-13	655	767	No hit	No description
PROSITE profile	PS50297	17.555	658	779	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.75E-16	664	769	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.3E-6	692	771	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.484	708	740	IPR002110	Ankyrin repeat
SMART	SM00248	0.0097	708	737	IPR002110	Ankyrin repeat
SMART	SM00248	300	747	776	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.51E-8	878	933	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	14	882	904	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.364	884	912	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.048	885	903	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	905	927	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.578	906	930	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.2E-4	908	927	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence Send to blast
MPPGGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE 60 NFQRRSYWML EEDLQHIVLV HYREVKGNRT NFNHTKGTEE AVPYSHETEE IALNSEMENS 120 VSSSFNPNTF QMRSQATDTT SLSSAQASEF EDAESAYDHQ ASSRLQPFLE LLQPKAEKIN 180 AGFSDAFYPM SFSNNYQEKL SAIPGVNFGS LTQAYKREDG NDAGVNYEPT KNLNSSLWEA 240 ALENSATGFQ SLSFQPSFSA THSDTMGIIS KQENGMLGHL FTDSFEKKQM CESKPRVQQG 300 WQTLEENSSC SSSWLMDRNL HSNTVDDVSS FHEGLNAANL LNSLAPCHMN SDKTNDYSIP 360 NDLQIQPSTT EQEYYLKSIS KRNETIEGKA NHASAIKPLL DGPFTEGLKK LDSFNRWMSR 420 ELGDVDDTQT QSNSETYWDT VESENGVDES SVPLQVRLDS YMLGPSLSQD QLFSIIDFSP 480 NWAYENSEIK VLITGRFLKS QQAEACKWSC MFGEVEVRAE VIADGVLRCY TPVHKAGRVP 540 FYVTCSNRLA CSEVREFEYR VGQIPDYDAK DDNSGCTNDI LSMRFGKLLS LSSTSPTFDP 600 NSLAENSVLI NKIDSLLKND NGEWDRMLQL TSDEDFSSER VEEQLLHQLL KEKLHVWLLQ 660 KLAVGGKGPS VLDEDGQGVL HFGAALGYDW VLLPTITAGV SVNFRDVNGW TALHWAASCG 720 RERTVASLIS LGAAPGALTD PSTKYPTGRT PADLASAEGH KGIAGYLAES ALSAHLSSLN 780 LDIKEGNNAG ISGANAVQTV SERIATPIGN GDLTDGLSLR DTLTAVCNAT QAAARIHQVF 840 RVKSFQRKQL KEYGGNEFGI SDEHALSLIA VKSHKPGKRD EHVDAAAIRI QNKFRSWKGR 900 KDYLIIRQRI VKIQAHVRGH QVRKNYRKIV WSVGIVEKII LRWRRKGSGL RGFKSEPLIE 960 GPSIQVSSSK DDDYDLLKEG RKQNEERLQK ALARVKSMVQ YPEARDQYRR LLNVVTEIKE 1020 TKVVCDSAAN SSEGRADMDD DLIDFAELLD EDIFMPTAGP *

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence Send to blast

MPPGGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE  60
NFQRRSYWML EEDLQHIVLV HYREVKGNRT NFNHTKGTEE AVPYSHETEE IALNSEMENS  120
VSSSFNPNTF QMRSQATDTT SLSSAQASEF EDAESAYDHQ ASSRLQPFLE LLQPKAEKIN  180
AGFSDAFYPM SFSNNYQEKL SAIPGVNFGS LTQAYKREDG NDAGVNYEPT KNLNSSLWEA  240
ALENSATGFQ SLSFQPSFSA THSDTMGIIS KQENGMLGHL FTDSFEKKQM CESKPRVQQG  300
WQTLEENSSC SSSWLMDRNL HSNTVDDVSS FHEGLNAANL LNSLAPCHMN SDKTNDYSIP  360
NDLQIQPSTT EQEYYLKSIS KRNETIEGKA NHASAIKPLL DGPFTEGLKK LDSFNRWMSR  420
ELGDVDDTQT QSNSETYWDT VESENGVDES SVPLQVRLDS YMLGPSLSQD QLFSIIDFSP  480
NWAYENSEIK VLITGRFLKS QQAEACKWSC MFGEVEVRAE VIADGVLRCY TPVHKAGRVP  540
FYVTCSNRLA CSEVREFEYR VGQIPDYDAK DDNSGCTNDI LSMRFGKLLS LSSTSPTFDP  600
NSLAENSVLI NKIDSLLKND NGEWDRMLQL TSDEDFSSER VEEQLLHQLL KEKLHVWLLQ  660
KLAVGGKGPS VLDEDGQGVL HFGAALGYDW VLLPTITAGV SVNFRDVNGW TALHWAASCG  720
RERTVASLIS LGAAPGALTD PSTKYPTGRT PADLASAEGH KGIAGYLAES ALSAHLSSLN  780
LDIKEGNNAG ISGANAVQTV SERIATPIGN GDLTDGLSLR DTLTAVCNAT QAAARIHQVF  840
RVKSFQRKQL KEYGGNEFGI SDEHALSLIA VKSHKPGKRD EHVDAAAIRI QNKFRSWKGR  900
KDYLIIRQRI VKIQAHVRGH QVRKNYRKIV WSVGIVEKII LRWRRKGSGL RGFKSEPLIE  960
GPSIQVSSSK DDDYDLLKEG RKQNEERLQK ALARVKSMVQ YPEARDQYRR LLNVVTEIKE  1020
TKVVCDSAAN SSEGRADMDD DLIDFAELLD EDIFMPTAGP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cxk_A	2e-13	475	562	9	91	calmodulin binding transcription activator 1
2cxk_B	2e-13	475	562	9	91	calmodulin binding transcription activator 1
2cxk_C	2e-13	475	562	9	91	calmodulin binding transcription activator 1
2cxk_D	2e-13	475	562	9	91	calmodulin binding transcription activator 1
2cxk_E	2e-13	475	562	9	91	calmodulin binding transcription activator 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G187700.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020421611.1	0.0	calmodulin-binding transcription activator 3
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A251NSH9	0.0	A0A251NSH9_PRUPE; Uncharacterized protein
STRING	EMJ09374	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Prupe.6G187700.2.p
Entrez Gene	18773983

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]