PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.6G177200.5.p | ||||||||
Common Name | PRUPE_ppa007578mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 364aa MW: 40986.4 Da PI: 6.8924 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.9 | 1.6e-11 | 75 | 112 | 2 | 39 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 + +k++rr+++NReAAr+sR RKka++++Le+ +L Prupe.6G177200.5.p 75 PTDKVQRRLAQNREAARKSRMRKKAYVQQLETSRLKLI 112 579****************************8655554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-8 | 70 | 122 | No hit | No description |
SMART | SM00338 | 1.7E-7 | 74 | 138 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.956 | 76 | 118 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.9E-8 | 76 | 107 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.41E-7 | 78 | 116 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 81 | 96 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.5E-29 | 165 | 240 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MNSPSTQFVT SRRMGAYEPI HQISMWEESF KSNGNFNASA SMIVDADTKL DNQSEDASHG 60 ILGPSSKYDQ EATKPTDKVQ RRLAQNREAA RKSRMRKKAY VQQLETSRLK LIQLEQELDR 120 ARQQQGIYIG SGLDASPLGF SGTINSGVTT FEMEYGHWVE EQNRQINELR TALHAHISDI 180 ELRFLVDSGM SHYFELFSMK LTAAKADVFY VMSGMWKTSA ERFFSWIGGF RPSEILKVLQ 240 PHLDPLTDQQ VLDVYNLRQS CQQAEDALSQ GMDKLQLTLA DTVAAGQLGE GSYVPQMANA 300 MQKLEELVSF VQQADNLRRG TLQQMSCILT IRQAARGLLA LGEYFQRLRA LSSLWATRPR 360 EPA* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.6G177200.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205406.1 | 0.0 | transcription factor TGA1 isoform X1 | ||||
Refseq | XP_008234510.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_016651902.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Refseq | XP_020421614.1 | 0.0 | transcription factor TGA1 isoform X1 | ||||
Swissprot | Q39237 | 0.0 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | M5WIH4 | 0.0 | M5WIH4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234510.1 | 0.0 | (Prunus mume) | ||||
STRING | EMJ06605 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65210.5 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.6G177200.5.p |
Entrez Gene | 18772111 |