PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G159100.1.p
Common NamePRUPE_ppa001169mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 891aa    MW: 98699.9 Da    PI: 9.4138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G159100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07245265526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C +fa+ G C++G++CkF H 
  Prupe.6G159100.1.p 245 YCTDFAK-GKCRRGSSCKFDHH 265
                         5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0083182208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216182209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5186206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929240267IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043241266IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5245265IPR000571Zinc finger, CCCH-type
SMARTSM003560.085300326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671300327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPGRPFHH KESGREWLSS ELAGSNGSKW  60
SGLETNDMQR SKHDLGLASR EPLPGSRGSH KIESINKGSN RYMDDSMVWD GDGNCSTRMS  120
PGLDEWRQHH SRSPKSGWSR SLRGRSRSWS RSRSRSQSWS RSPDRGYRRE SVFLDRNRSR  180
SGVSAQLCKD FTAGRCRRAS DCQFLHEGSS NYDDSWDSRH RKGGASKYSP DTGDYPLKSG  240
RSSVYCTDFA KGKCRRGSSC KFDHHRASDG YSKGSMNERE NERRKRDAST ERGADRVPHR  300
SGDIPCKFFA AGNCRNKKYC RFSHHIQARA SPERKSRDGR WGLSDAGPAW DGPRWSDTVA  360
LSDAAKLTAD NNGNISVPEL RPSAWSMDDN RWGHGLNNDN QKCADPSVTH EAAQRNEKDT  420
HLWKEDNVGA HVGLPKSRDT EKWLGDMSPD WNYTIQSSNH VGKEEHSGNA LGSEPSSQVH  480
GAASIMQPMI AERSNFLQNK DMREDGAIPL PYDDRNPIEK SASSRNDLNV SANIMPRQSF  540
DNSGQSSSAF PFSGLSTVRQ GQTLIPTHPQ GGIVKSPQDT LSSESKSVIK LDIGDAKTSL  600
ETSLVTGIPQ VPNVVGDKEL VQLTNLSASL AQFLGNHQQH SQFYAVLNSH NAPPPLAKSE  660
GSSEQLSAAA IQPDPVISEK PYDPIQDSRE LRNSNNPVFL LPNNAEKTRV DGKVDKPSNV  720
VSPSSFPSGA NGNDYLQAHN SVEPKQKNCQ LSQLEPLAKS EIVKGNSEFG AQESKNVKEE  780
SKSPDIGPLE GTEKDGAEEG KKSKEVKGSR AFKFALVEFV KDLLKPTWKE GQINKDAYKT  840
IVKKVVDKVT STMQGANIPQ TQEKIDHYLS FSKPKLTKLV QAYVEKTQKG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G159100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208403.10.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLM5W7860.0M5W786_PRUPE; Uncharacterized protein
STRINGEMJ096020.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-11C3H family protein