PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G138100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 391aa MW: 43747.8 Da PI: 6.2441 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.4 | 6.9e-50 | 17 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + pGfrF+Ptdeel+++yLk+k+eg + + evi+evdi+++ePwdLp k+v ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+ Prupe.6G138100.1.p 17 MFPGFRFSPTDEELISYYLKNKLEGPEpGKSVEVIPEVDICNFEPWDLPaKSVIQSDNEWFFFSPRGRKYPNGSQSRRATEFGYWKATGKE 107 579**********************996444589***************667777899********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+s +++++g+k+tLvf+ grapkge+t+W+mhey + Prupe.6G138100.1.p 108 RNVKS-TSNVIGTKRTLVFHMGRAPKGERTEWIMHEYCM 145 *****.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-55 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.507 | 17 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 19 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MGAVSKEAQL SIAASSMFPG FRFSPTDEEL ISYYLKNKLE GPEPGKSVEV IPEVDICNFE 60 PWDLPAKSVI QSDNEWFFFS PRGRKYPNGS QSRRATEFGY WKATGKERNV KSTSNVIGTK 120 RTLVFHMGRA PKGERTEWIM HEYCMNDKSQ DSIVVCRLRK NSDFRLNDTT NGGSSSRNPL 180 STVHNSENAV SEVGIIDYDK PVECYSKKST SSHDSHSTEQ IDSASESNQK QTTEVTQTES 240 SGHQKGSYDD DFYADILNDD IIKLDEVSVS ASADTLPVLA NKSEAEQNSH QPMQAICNSE 300 AIPFQGTANR RIHLRKRKEK FPAESLDGPN SHESPKTSAD RMDDQHVLLY VIIIILVLLA 360 LFLSKFCFTD IAGSVSFLVE RFLPSQKHHK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-42 | 16 | 160 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-42 | 16 | 160 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-42 | 16 | 160 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-42 | 16 | 160 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-42 | 16 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-42 | 16 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-42 | 16 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-42 | 16 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-42 | 16 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-42 | 16 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-42 | 16 | 161 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-42 | 16 | 161 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-42 | 16 | 160 | 16 | 164 | NAC domain-containing protein 19 |
4dul_B | 8e-42 | 16 | 160 | 16 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 314 | 319 | RKRKEK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G138100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020421679.1 | 0.0 | NAC domain-containing protein 40 | ||||
TrEMBL | A0A251NQ15 | 0.0 | A0A251NQ15_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229937.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7315 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 1e-91 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G138100.1.p |