PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G093500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 527aa    MW: 59163.8 Da    PI: 7.8555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G093500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013124145223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C  C+k F++  +L+ H+r+H
  Prupe.6G093500.1.p 124 SCYVCNKNFPSIKSLHGHMRLH 145
                         6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.4086390IPR007087Zinc finger, C2H2
SMARTSM003550.296385IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-46481IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515123150IPR007087Zinc finger, C2H2
SMARTSM003550.25123145IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.2E-8124145No hitNo description
PfamPF139125.2E-6125147IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-8448475No hitNo description
PfamPF139121.3E-5453475IPR007087Zinc finger, C2H2
SMARTSM003552.5453475IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538453475IPR007087Zinc finger, C2H2
PROSITE patternPS000280455475IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MKKLQAKNKH LQEDDEDQED QESMDHDDED IHSQESEQEV ELHDDQKGKQ VVQIDVHHQN  60
GDRVCEQCGK RFQNGKALGG HIKVHFNQSL LPKKNKNLFK PKNKHLSLKE AHSPVGDDHS  120
NKISCYVCNK NFPSIKSLHG HMRLHRERDW KGVRPPGPAL SPCDESNSSS SYENVSEDED  180
DGDSSLSDRT IETDNDVANF LVNWTKIEQR RRSLIANQTE PNHAENSGLS NQRQRMPHYA  240
EDQVGEFAGK KPIEESPVGY KGSPSSKKIK CDGRSNKKST MEASKSTGGT KPMKDIGLLD  300
QTHKQIPTKR QEFGSRRSDT ISDVNMDEDS GFSSKYVENQ VGELSVKKPI QKSPVGYKGK  360
PSFKIKLKLD GKGKASMQDV DENDDQTSWK TKPKKMTMKS TSKTGTKPIK DTALLYQTRK  420
QMARKTQEFG TKFAEKGKYH EEAEAVEHGI KQFECNICPC KFSTGQALGG HKRGHNYKGV  480
PVKEARGTAK VAPMDLEDGE IRTDPTKFNL DLNQLPHQTD DEDIGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G093500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422050.10.0uncharacterized protein LOC18773858
TrEMBLA0A251NMM50.0A0A251NMM5_PRUPE; Uncharacterized protein
STRINGXP_008225096.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16199410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.18e-14C2H2 family protein