PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G092600.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 319aa MW: 35194.7 Da PI: 7.2231

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G092600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129.4	1e-40	43	104	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rknk+sss Prupe.6G092600.1.p 43 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGTLRNVPVGGGCRKNKRSSS 104 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	41	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-34	45	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.59	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MNYMDPSSGQ QHQEMSAHSL DMLVCSKTQQ QQQQQDRKPR PQPEQALKCP RCDSTNTKFC 60 YYNNYSLSQP RYFCKACRRY WTKGGTLRNV PVGGGCRKNK RSSSSSKRSQ DQQPLTPNSN 120 NPLPSLGYDS NDLTLAFARL QRQSCGQLGF DDQDHLSILG NPNNTTSHGD HSILGNHGLN 180 MNTTSAAAAP GFFDALRTGF LETHNGNFQN MYYGFGNGSN SSSLGEVENG ACGEMGLHTF 240 EEMTNSTTTA VTVTTMKQEL CNARDPQSES NRVLWGFPWQ LNGDANNNMV SNECDSGRVE 300 SWNGLAPSWH GLLHSPLV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G092600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM366546	0.0	HM366546.1 Prunus persica clone PpDOF1 Dof-type zinc finger domain-containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020422707.1	0.0	dof zinc finger protein DOF2.1
TrEMBL	A0A251NMG1	0.0	A0A251NMG1_PRUPE; Uncharacterized protein
STRING	XP_008224836.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	1e-41	Dof family protein

Link Out ? help Back to Top
Phytozome	Prupe.6G092600.1.p