PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G091100.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 465aa    MW: 50730.1 Da    PI: 6.9828
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G091100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17154203155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Prupe.6G091100.3.p 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-9154203IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-15154212IPR016177DNA-binding domain
PROSITE profilePS5103217.385155211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-16155211IPR001471AP2/ERF domain
SMARTSM003808.1E-31155217IPR001471AP2/ERF domain
CDDcd000188.16E-13246291No hitNo description
SuperFamilySSF541713.14E-6246290IPR016177DNA-binding domain
SMARTSM003801.1E-12247295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MLDLNLNVVG SGPNDVESCG TQMDESGTSN SSVVNADASS TNDDSCSTRA ARYDAVTTFN  60
FDILKVRGGE DEEDDVVVTK ELFPVTGGLS NWPGQGQSSA SSSLVRKNLM ELGFDHGGTG  120
EVRLVQQKQQ QPAAPPPQQQ QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVDADINY NLSDYEEDLK QMKNLTKEEF VHILRRQSTG  240
FSRGSSRYRG VTLHKCGRWE ARMGQFLGKK AYDKAAIKCN GREAVTNFEP STYEGEMISE  300
AGNEDGDHNL DLNLGISPPS FGNCQKEVEG HLQFHSGPYD GHNGKRMEHN VNATMSDPPF  360
KGLVMTSQHP PLWNGVYPSC FSNQERATEK RIALGSQGPP NWAWQMHGQV SATPMPLFST  420
AASSGFSFSA TTPPAAVHPL QPSTPTALNL CFTSPATAAA NTSQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G091100.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844371e-173KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422220.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-120RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A251NMC40.0A0A251NMC4_PRUPE; Uncharacterized protein
STRINGXP_008224974.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-106related to AP2.7