PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G088900.1.p | ||||||||
Common Name | PRUPE_ppa019793mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 260aa MW: 29754.7 Da PI: 9.1125 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 19 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Prupe.6G088900.1.p 19 SRWCPTPEQLMILEEMYRAgIRTPNASQIQHITAQLslygKIEGKNVFYWFQNHKARDRQ 78 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 118.9 | 2.2e-38 | 17 | 79 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+PtpeQ++iLee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk Prupe.6G088900.1.p 17 SSSRWCPTPEQLMILEEMYRAGIRTPNASQIQHITAQLSLYGKIEGKNVFYWFQNHKARDRQK 79 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.301 | 14 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-7 | 16 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-11 | 19 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-8 | 19 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.7E-18 | 19 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-5 | 20 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MPLSGKQSMT TLTPANSSSR WCPTPEQLMI LEEMYRAGIR TPNASQIQHI TAQLSLYGKI 60 EGKNVFYWFQ NHKARDRQKL RRKLCKQLQQ QQLLYNHHHN YHNYHNNPYH HHHHHQQQQQ 120 QQQSLLGYLD HLSPPASSSA LQQLSNCHNY SSAGFLPPPQ VGVEDALMNQ AWKMEIPQRV 180 EMEKSVMSMY GRDWMMMMMM EDVGPPSPCC STSTRATTTR QPLKTLQLFP ITATNLKEES 240 SSPSSSNPLS PPTTPTPNY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G088900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422427.1 | 0.0 | WUSCHEL-related homeobox 3 isoform X2 | ||||
TrEMBL | A0A251NMA3 | 0.0 | A0A251NMA3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09901 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-41 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G088900.1.p |
Entrez Gene | 18773558 |