PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.6G074100.2.p | ||||||||
Common Name | PRUPE_ppa002403mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 677aa MW: 74245.9 Da PI: 9.2467 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 578 | 627 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Prupe.6G074100.2.p 578 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 627 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 4.03E-7 | 387 | 478 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 15.641 | 573 | 632 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 577 | 630 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 578 | 628 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-15 | 579 | 660 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.22E-17 | 579 | 629 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 677 aa Download sequence Send to blast |
MVLQKRLDYG FNGYQVPATP RATRSARRRG AIRKRVDDNS MGAFDLLATI AGKLLLEGES 60 SPASSHTSKD QCAGTKENCL DGDKPLKVEP CDQGSCDRRI PVSDHISQGP NQSSCSKESP 120 VHQNESSVMT TSNCSERFAS DMLVSGKCKN ETGSFTSKIE AGSSGCREAG EFKLGGEVKT 180 LIKDETNKSA KVLIGTGPDM CGLEDPVVWE GEPPALVSSD SSTKVPMYVD HIPQRSFPTS 240 RDDVKVVSRD DDENSSGCTH PVTSIKYSRP APSRIGDRRI RKILASKYWK VAPKLKDDIH 300 SNSYRDQKPN YHNRKNCYKR QRSQMNIPFK KRKLFDRSAV LNIDEGISRE GFFDSRGKGI 360 TGDASCSKMQ GAAMKSSSLA GQHSSFQSRS SHVKLRIKSF RVPELFIEIP DTATVGSLKK 420 TVMDAVTAVL GGGLCVGVLL QGKKVRDDNK TLLQTGISQD NQLDSLGFTL EPNSSQNPPP 480 LCSGDSPCML PCDVLQPLTR YPSGPTSEAS PEPHTASLGN FIESDHDSAP SPTDMSAEKS 540 TTDSKALVAV PDMSVEALAV VPGHRKSKRF DIGQRRIRRP FSVAEVEALV QAVEKLGTGR 600 WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLTAHAYWSQ 660 QQAKQQLKQP ETCLLV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-56 | 562 | 668 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppe.20408 | 0.0 | shoot |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.6G074100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208711.1 | 0.0 | telomere repeat-binding protein 5 isoform X2 | ||||
TrEMBL | M5WSY3 | 0.0 | M5WSY3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09910 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-120 | TRF-like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.6G074100.2.p |
Entrez Gene | 18775186 |