PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G230800.1.p
Common NamePRUPE_ppa011954mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 191aa    MW: 21513.3 Da    PI: 9.2601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G230800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ede+l ++++++G g+W++I+   g++R++k+c++rw +yl
  Prupe.5G230800.1.p 13 KGAWSKQEDEKLSQYIQKHGEGSWRSIPLAAGLHRCGKSCRLRWVNYL 60
                        79********************************************97 PP
2Myb_DNA-binding54.42.9e-1766111148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Prupe.5G230800.1.p  66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23462IPR009057Homeodomain-like
PROSITE profilePS5129417.561860IPR017930Myb domain
SMARTSM007174.6E-141262IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-3012107IPR009057Homeodomain-like
PfamPF002495.1E-161360IPR001005SANT/Myb domain
CDDcd001679.01E-111560No hitNo description
PROSITE profilePS5129426.45961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2663116IPR009057Homeodomain-like
SMARTSM007171.4E-1665113IPR001005SANT/Myb domain
PfamPF002496.3E-1666111IPR001005SANT/Myb domain
CDDcd001676.79E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MRKPCCEKKK TNKGAWSKQE DEKLSQYIQK HGEGSWRSIP LAAGLHRCGK SCRLRWVNYL  60
RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LKRKLIQMGV  120
DPNNHRIGHN FGHTKSFGSR INTNDQPSVN SHSDDPLLDS TSEPESNTSC SALPDLNLDL  180
TIGLPISLGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281211526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G230800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345474e-38AB434547.1 Fagus crenata FcMYBS2 mRNA for transcription factor MYBS2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209645.11e-140myb-related protein 308
SwissprotP813931e-73MYB08_ANTMA; Myb-related protein 308
TrEMBLM5WAU51e-138M5WAU5_PRUPE; Uncharacterized protein
STRINGEMJ108441e-139(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.18e-75myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]