PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G204600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 606aa    MW: 69493.7 Da    PI: 5.0244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G204600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011301321222
                         EETTTTEEESSHHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                          C  Cgk F++  + k+H ++
  Prupe.5G204600.1.p 301 YCVVCGKKFKSEKQWKNHEQS 321
                         5*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465657.33E-24487IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.7E-24576IPR001623DnaJ domain
SMARTSM002712.4E-23769IPR001623DnaJ domain
PROSITE profilePS5007619.84877IPR001623DnaJ domain
CDDcd062572.30E-18866IPR001623DnaJ domain
PfamPF002261.6E-21974IPR001623DnaJ domain
PRINTSPR006251.2E-151028IPR001623DnaJ domain
PRINTSPR006251.2E-152843IPR001623DnaJ domain
PRINTSPR006251.2E-154969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.05E-13282330No hitNo description
SMARTSM004512.8E-4297331IPR003604Zinc finger, U1-type
SMARTSM003550.43300324IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-10300325IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280302324IPR007087Zinc finger, C2H2
SMARTSM003559.2576600IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933576605IPR007087Zinc finger, C2H2
PROSITE patternPS000280578600IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MSSSERRCHY EVLGLSRDCS PDEIRSAYKK LALQRHPDKL VQSGLSQAQA TAQFQELSQA  60
YEVLSDPKER AWYDSHRSQI LFADPNSANS VPDSVIPNLF SFFSTTVFSG YSDSGRGFYK  120
VYADVFNKIY ANELSYVRKL GLGLDTVREA PAMGNLESPY AQVTAFYNYW LGFCTVMDFF  180
WVDQYDVMSG PNRKVRRLME EDNKKLRKKA KREYNDTVRG LAEFVKKRDK RVMDMMVKRE  240
EERERKREEE REKKKKLEKE KLERAMAYEE PEWAKVVEEE EGGNGVEEME QEEEERRKEL  300
YCVVCGKKFK SEKQWKNHEQ SKKHRDKVAE FRESIGDEEF DAQEILEGEA EERGEVDDID  360
GVDTDELGEG IREGLKIGEE ENGVGVSDRE DKFYEVGDEN EREKVDEAVG LDGDDGEDEM  420
GVLEAMLAGR NSRKNAALRV EQEDSFVTDI HVENDDDEVE FMEYDNRKST RRKGGARKDR  480
SKKSSGESKK VGRSEINSDR GEELNEHDNS HIEESASHSF VKKESNDKGD DQLARKKKSS  540
SQPVDKKENV KKEANSKSKN SSKGKKAKAA SKNSSNLCDT CGEEFDSRNQ LHKHLGDTGH  600
AKLKY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211KKLRKKAKR
2249255EREKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G204600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419607.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A251PBC80.0A0A251PBC8_PRUPE; Uncharacterized protein
STRINGXP_008240022.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-160DNAJ heat shock N-terminal domain-containing protein