PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.5G196000.1.p | ||||||||
Common Name | PRUPE_ppa007653mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 40482.7 Da PI: 7.9668 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.5 | 4.4e-56 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke Prupe.5G196000.1.p 17 LPPGFRFHPTDEELISHYLHKKVIDISFSC-KAIGEVDLNKSEPWDLPGKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKE 106 79****************************.88***************99999************************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfy+grapkgek++Wvmheyrle Prupe.5G196000.1.p 107 IYK-GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 143 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-65 | 8 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.089 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-29 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MEHVPAGMVE QYEQIDLPPG FRFHPTDEEL ISHYLHKKVI DISFSCKAIG EVDLNKSEPW 60 DLPGKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYKG KSLVGMKKTL 120 VFYRGRAPKG EKSNWVMHEY RLEGKFSVHN LPKTAKNEWV ICRVFEKNSG GKKTHISGFV 180 RYGALGNEMD PSGLPPLMDS SPYSSKTKLA SESSYVPCFS NPDPTDVQRN QGIVDYMNNP 240 LFGVSSNTSN FFPRAPFSTS FYSAQSAPVA ANFQFPGSVL MQDQSILRAL LENNGSNMRQ 300 SFKTEREMVS VSQETGLTSE MNTEISSVMS NLEMGRRPFG DQEAPAAAAG AVDLDNFWNY 360 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 3 | 173 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 3 | 173 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 3 | 173 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 3 | 173 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-56 | 3 | 173 | 3 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 3 | 173 | 3 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppe.16273 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.5G196000.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209288.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-161 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | M5W9R3 | 0.0 | M5W9R3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10487 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-159 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.5G196000.1.p |
Entrez Gene | 18775870 |
Publications ? help Back to Top | |||
---|---|---|---|
|