PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G157600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 610aa    MW: 67300.2 Da    PI: 6.0539
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G157600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-1431121199
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffkv+       s++l lp kfa +   ++   +++ +led+ g +Wev +  ++  g+  l++GW+ F  +++Lk g+f++F ++ +s f
  Prupe.5G157600.1.p  31 FFKVM--IGDRFSKLLFLPPKFAPTVsALV---NQKAVLEDSLGLQWEVII--SRINGSLSLKQGWNAFSLDHDLKIGEFLIFNYITSSHF 114
                         67777..444555679*******9996555...347***************..9999999**************************98999 PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                            vk+++k
  Prupe.5G157600.1.p 115 --IVKIYDK 121
                         ..***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1824124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2125124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36529122IPR003340B3 DNA binding domain
CDDcd100171.38E-1530120No hitNo description
SMARTSM010192.8E-831122IPR003340B3 DNA binding domain
PfamPF023621.9E-1231121IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-10510592IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.22510609IPR003340B3 DNA binding domain
SMARTSM010190.21513605IPR003340B3 DNA binding domain
CDDcd100173.97E-7520592No hitNo description
Gene3DG3DSA:2.40.330.101.4E-8521596IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDGKVACVEC TQKCLLDHGN KKKASPDVAS FFKVMIGDRF SKLLFLPPKF APTVSALVNQ  60
KAVLEDSLGL QWEVIISRIN GSLSLKQGWN AFSLDHDLKI GEFLIFNYIT SSHFIVKIYD  120
KSGCEKLNFP EAINQKKRTR DNRKYTFKAG PSHTIDRSSM NKRDSRTSVV HGSDADIGHH  180
LHEMNDTGKD LIVTESARDN SNERSKLNPK EAYIEEMICM LDRDVGDKQE EDRTYIFDLS  240
DFEMLKKNSG TGGSHEVTAM DETCTDHDDS LLRLRNGAGP VDKNPVAKGA VTTAIPMDET  300
CSDHDDSLLR LINEAGSVDK SPVAKEAVTA AIPSDASKFD GSQINNSSET KVQNTASPSH  360
EGLCICKTSW HLFPKAALKP EENENISNIS NTAINKCLTA DGSESLSGNE VVISGKEHDF  420
IDDSCQSANK KISEISESFD KTMKAIKIES VELTSDPCSQ KIIPQINGES VKVVNPVCSK  480
ISNMIRTGND CAVPVVKSEP VDPVITWPIS SSFSCQVKAG SQSFLELPMR LPIRMTYRGR  540
PQTDRRVVYL RDPVMRLWPV LYIERNYFKT LASGWEAFSK ANNIQPGDEC VIGIENGVEG  600
ICSVQIISK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.47471e-105fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G157600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419024.10.0B3 domain-containing protein Os01g0905400 isoform X1
TrEMBLA0A251P9180.0A0A251P918_PRUPE; Uncharacterized protein
STRINGXP_008239617.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-11B3 family protein