PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G157300.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 239aa    MW: 27443.9 Da    PI: 7.0041
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G157300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037110133123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C++C+ksF+    L +H  + H
  Prupe.5G157300.3.p 110 WQCGYCKKSFRAEKFLDQHFDNrH 133
                         58**********999999976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKNTSLFIPI LFLLSFSLLQ TGQVSSFTQR NQEFEKSASS RTLEQEHEHA HEVHCSRERS  60
RAAWKIIEEY LMPFLEQEHY EMSSKCRLHP DNDLFRDQEQ HKIHLDINEW QCGYCKKSFR  120
AEKFLDQHFD NRHYNLLNVS GSKCLADLCG ALHCDVVMNT KSSKTKCNPA AAARNHHLCE  180
GLADSCFPIN QGPSARRLNE AIKCILSGYF HTDFDAAPYF LSDSLFAPKR DENGNPRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G157300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239410.11e-165PREDICTED: uncharacterized protein LOC103338010 isoform X2
TrEMBLA0A251P9221e-178A0A251P922_PRUPE; Uncharacterized protein
STRINGXP_008239409.11e-134(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.13e-85C2H2-like zinc finger protein